Phenotypic screening in cancer drug discovery—past, present and future

JG Moffat, J Rudolph, D Bailey - Nature reviews Drug discovery, 2014 - nature.com
There has been a resurgence of interest in the use of phenotypic screens in drug discovery
as an alternative to target-focused approaches. Given that oncology is currently the most …

Principles and methods of integrative genomic analyses in cancer

VN Kristensen, OC Lingjærde, HG Russnes… - Nature Reviews …, 2014 - nature.com
Combined analyses of molecular data, such as DNA copy-number alteration, mRNA and
protein expression, point to biological functions and molecular pathways being deregulated …

Phenotypic mapping of pathologic cross-talk between glioblastoma and innate immune cells by synthetic genetic tracing

MJ Schmitt, C Company, Y Dramaretska, I Barozzi… - Cancer discovery, 2021 - AACR
Glioblastoma is a lethal brain tumor that exhibits heterogeneity and resistance to therapy.
Our understanding of tumor homeostasis is limited by a lack of genetic tools to selectively …

An evaluation of RNA-seq differential analysis methods

D Li, MS Zand, TD Dye, ML Goniewicz, I Rahman… - PLoS …, 2022 - journals.plos.org
RNA-seq is a high-throughput sequencing technology widely used for gene transcript
discovery and quantification under different biological or biomedical conditions. A …

Elevated FOXG1 and SOX2 in glioblastoma enforces neural stem cell identity through transcriptional control of cell cycle and epigenetic regulators

H Bulstrode, E Johnstone… - Genes & …, 2017 - genesdev.cshlp.org
Glioblastoma multiforme (GBM) is an aggressive brain tumor driven by cells with hallmarks
of neural stem (NS) cells. GBM stem cells frequently express high levels of the transcription …

Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner

SH Stricker, A Feber, PG Engström… - Genes & …, 2013 - genesdev.cshlp.org
Epigenetic changes are frequently observed in cancer. However, their role in establishing or
sustaining the malignant state has been difficult to determine due to the lack of experimental …

Glioblastoma stem cells respond to differentiation cues but fail to undergo commitment and terminal cell-cycle arrest

H Carén, SH Stricker, H Bulstrode, S Gagrica… - Stem cell reports, 2015 - cell.com
Glioblastoma (GBM) is an aggressive brain tumor whose growth is driven by stem cell-like
cells. BMP signaling triggers cell-cycle exit and differentiation of GBM stem cells (GSCs) …

Transcription and beyond: delineating FOXG1 function in cortical development and disorders

PS Hou, DO HAilin, T Vogel… - Frontiers in cellular …, 2020 - frontiersin.org
Forkhead Box G1 (FOXG1) is a member of the Forkhead family of genes with non-redundant
roles in brain development, where alteration of this gene's expression significantly affects …

Inhibitors of phosphodiesterase as cancer therapeutics

T Peng, J Gong, Y Jin, Y Zhou, R Tong, X Wei… - European journal of …, 2018 - Elsevier
Phosphodiesterases (PDEs) are a class of enzymes that hydrolyze cyclic adenosine
monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP) which is involved in …

EphrinB2 drives perivascular invasion and proliferation of glioblastoma stem-like cells

B Krusche, C Ottone, MP Clements, ER Johnstone… - Elife, 2016 - elifesciences.org
Glioblastomas (GBM) are aggressive and therapy-resistant brain tumours, which contain a
subpopulation of tumour-propagating glioblastoma stem-like cells (GSC) thought to drive …