Investigating the conformational landscape of AlphaFold2-predicted protein kinase structures

C Al-Masri, F Trozzi, SH Lin, O Tran… - Bioinformatics …, 2023 - academic.oup.com
Protein kinases are a family of signaling proteins, crucial for maintaining cellular
homeostasis. When dysregulated, kinases drive the pathogenesis of several diseases, and …

TeachOpenCADD 2022: open source and FAIR Python pipelines to assist in structural bioinformatics and cheminformatics research

D Sydow, J Rodríguez-Guerra, TB Kimber… - Nucleic Acids …, 2022 - academic.oup.com
Computational pipelines have become a crucial part of modern drug discovery campaigns.
Setting up and maintaining such pipelines, however, can be challenging and time …

Benchmarking Cross-Docking Strategies in Kinase Drug Discovery

DA Schaller, CD Christ, JD Chodera… - Journal of Chemical …, 2024 - ACS Publications
In recent years, machine learning has transformed many aspects of the drug discovery
process, including small molecule design, for which the prediction of bioactivity is an integral …

[HTML][HTML] Benchmarking Cross-Docking Strategies for Structure-Informed Machine Learning in Kinase Drug Discovery

D Schaller, CD Christ, JD Chodera, A Volkamer - bioRxiv, 2023 - ncbi.nlm.nih.gov
In recent years machine learning has transformed many aspects of the drug discovery
process including small molecule design for which the prediction of the bioactivity is an …

Machine Learning for Kinase Drug Discovery

TB Kimber - 2023 - refubium.fu-berlin.de
Cancer is one of the major public health issues, causing several million losses every year.
Although anti-cancer drugs have been developed and are globally administered, mild to …

Kinase Similarity Assessment Pipeline for Off-Target Prediction [Article v1. 0]

TB Kimber, D Sydow, A Volkamer - Living Journal of …, 2021 - livecomsjournal.org
Kinases are established drug targets to combat cancer and inflammatory diseases. Despite
decades of kinase research, challenges still remain, such as the under-exploration of a large …