MISA-web: a web server for microsatellite prediction

S Beier, T Thiel, T Münch, U Scholz, M Mascher - Bioinformatics, 2017 - academic.oup.com
Motivation Microsatellites are a widely-used marker system in plant genetics and forensics.
The development of reliable microsatellite markers from resequencing data is challenging …

A chromosome conformation capture ordered sequence of the barley genome

M Mascher, H Gundlach, A Himmelbach, S Beier… - Nature, 2017 - nature.com
Cereal grasses of the Triticeae tribe have been the major food source in temperate regions
since the dawn of agriculture. Their large genomes are characterized by a high content of …

Copy number variation and disease resistance in plants

A Dolatabadian, DA Patel, D Edwards… - Theoretical and Applied …, 2017 - Springer
Plant genome diversity varies from single nucleotide polymorphisms to large-scale
deletions, insertions, duplications, or re-arrangements. These re-arrangements of …

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill… - Genome biology, 2017 - Springer
Background One of the main challenges in metagenomics is the identification of
microorganisms in clinical and environmental samples. While an extensive and …

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

S Beier, A Himmelbach, C Colmsee, XQ Zhang… - Scientific Data, 2017 - nature.com
Barley (Hordeum vulgare L.) is a cereal grass mainly used as animal fodder and raw
material for the malting industry. The map-based reference genome sequence of barley …

Identification of nitrogen use efficiency genes in barley: searching for QTLs controlling complex physiological traits

M Han, J Wong, T Su, PH Beatty, AG Good - Frontiers in plant science, 2016 - frontiersin.org
Over the past half century, the use of nitrogen (N) fertilizers has markedly increased crop
yields, but with considerable negative effects on the environment and human health …

Barley germination: spatio-temporal considerations for designing and interpreting 'omics' experiments

SN Daneri-Castro, B Svensson, TH Roberts - Journal of Cereal Science, 2016 - Elsevier
Germination of barley grain is central to the malting industry and is a valuable model for
cereal grain germination. Our current understanding of the complexity of germination at the …

Genome‐Wide Association Analysis of Grain Yield‐Associated Traits in a Pan‐European Barley Cultivar Collection

X Xu, R Sharma, A Tondelli, J Russell… - The plant …, 2018 - Wiley Online Library
A collection of 379 Hordeum vulgare cultivars, comprising all combinations of spring and
winter growth habits with two and six row ear type, was screened by genome wide …

Identification of drought responsive proteins and related proteomic QTLs in barley

P Rodziewicz, K Chmielewska… - Journal of …, 2019 - academic.oup.com
Drought is a major abiotic stress that negatively influences crop yield. Breeding strategies for
improved drought resistance require an improved knowledge of plant drought responses …

Fine mapping of the barley chromosome 6H net form net blotch susceptibility locus

J Richards, S Chao, T Friesen… - G3: Genes, Genomes …, 2016 - academic.oup.com
Net form net blotch, caused by the necrotrophic fungal pathogen Pyrenophora teres f. teres,
is a destructive foliar disease of barley with the potential to cause significant yield loss in …