During the last decades multiple unexpected and wide spread food safety incidents have
occurred. The aim of this study is to learn from the past by studying the early emergence of …

Tens of thousands of genotype-phenotype associations have been discovered to date, yet
not all of them are easily accessible to scientists. Here, we describe GWASkb, a machine …

Pharmacogenomics (PGx) studies how individual gene variations impact drug response
phenotypes, which makes PGx-related knowledge a key component towards precision …

Text mining services are rapidly becoming a crucial component of various knowledge
management pipelines, for example in the process of database curation, or for exploration …

Tumor molecular profiling plays an integral role in identifying genomic anomalies which may
help in personalizing cancer treatments, improving patient outcomes and minimizing risks …

The need for efficient text-mining tools that support curation of the biomedical literature is
ever increasing. In this article, we describe an experiment aimed at verifying whether a text …

In this article, we describe the architecture of the OntoGene Relation mining pipeline and its
application in the triage task of BioCreative 2012. The aim of the task is to support the triage …

Experimentally generated biological information needs to be organized and structured in
order to become meaningful knowledge. However, the rate at which new information is …

In this paper we briefly describe the architecture of the OntoGene Relation mining pipeline
and its application in the task 1 of BioCreative IV. The aim of the task is to deliver information …

Background Full syntactic parsing of clinical text as a part of clinical natural language
processing (NLP) is critical for a wide range of applications. Several robust syntactic parsers …