Venn diagrams in bioinformatics

A Jia, L Xu, Y Wang - Briefings in bioinformatics, 2021 - academic.oup.com
Venn diagrams are widely used tools for graphical depiction of the unions, intersections and
distinctions among multiple datasets, and a large number of programs have been developed …

Molecular mechanisms of long noncoding RNAs

KC Wang, HY Chang - Molecular cell, 2011 - cell.com
Long noncoding RNAs (lncRNAs) are an important class of pervasive genes involved in a
variety of biological functions. Here we discuss the emerging archetypes of molecular …

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks

F Aymard, B Bugler, CK Schmidt, E Guillou… - Nature structural & …, 2014 - nature.com
Although both homologous recombination (HR) and nonhomologous end joining can repair
DNA double-strand breaks (DSBs), the mechanisms by which one of these pathways is …

H2AK119ub1 guides maternal inheritance and zygotic deposition of H3K27me3 in mouse embryos

H Mei, C Kozuka, R Hayashi, M Kumon, H Koseki… - Nature …, 2021 - nature.com
Parental epigenomes are established during gametogenesis. While they are largely reset
after fertilization, broad domains of Polycomb repressive complex 2 (PRC2)-mediated …

Histone modifications for human epigenome analysis

H Kimura - Journal of human genetics, 2013 - nature.com
Histones function both positively and negatively in the regulation of gene expression, mainly
governed by post-translational modifications on specific amino acid residues. Although …

Primordial germ cells in mice

M Saitou, M Yamaji - Cold Spring Harbor perspectives in …, 2012 - cshperspectives.cshlp.org
Germ cell development creates totipotency through genetic as well as epigenetic regulation
of the genome function. Primordial germ cells (PGCs) are the first germ cell population …

Chromatin replication and epigenome maintenance

C Alabert, A Groth - Nature reviews Molecular cell biology, 2012 - nature.com
Stability and function of eukaryotic genomes are closely linked to chromatin structure and
organization. During cell division the entire genome must be accurately replicated and the …

Epigenetic reprogramming in mouse pre-implantation development and primordial germ cells

M Saitou, S Kagiwada, K Kurimoto - Development, 2012 - journals.biologists.com
Epigenetic modifications are crucial for the identity and stability of cells, and, when aberrant,
can lead to disease. During mouse development, the genome-wide epigenetic states of pre …

[HTML][HTML] Targeting polycomb to pericentric heterochromatin in embryonic stem cells reveals a role for H2AK119u1 in PRC2 recruitment

S Cooper, M Dienstbier, R Hassan, L Schermelleh… - Cell reports, 2014 - cell.com
The mechanisms by which the major Polycomb group (PcG) complexes PRC1 and PRC2
are recruited to target sites in vertebrate cells are not well understood. Building on recent …

Major satellite repeat RNA stabilize heterochromatin retention of Suv39h enzymes by RNA-nucleosome association and RNA: DNA hybrid formation

O Velazquez Camacho, C Galan, K Swist-Rosowska… - Elife, 2017 - elifesciences.org
The Suv39h1 and Suv39h2 histone lysine methyltransferases are hallmark enzymes at
mammalian heterochromatin. We show here that the mouse Suv39h2 enzyme differs from …