Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

Current strategies of polyploid plant genome sequence assembly

M Kyriakidou, HH Tai, NL Anglin, D Ellis… - Frontiers in plant …, 2018 - frontiersin.org
Polyploidy or duplication of an entire genome occurs in the majority of angiosperms. The
understanding of polyploid genomes is important for the improvement of those crops, which …

Genomic BLUP decoded: a look into the black box of genomic prediction

D Habier, RL Fernando, DJ Garrick - Genetics, 2013 - academic.oup.com
Genomic best linear unbiased prediction (BLUP) is a statistical method that uses
relationships between individuals calculated from single-nucleotide polymorphisms (SNPs) …

The impact of population structure on genomic prediction in stratified populations

Z Guo, DM Tucker, CJ Basten, H Gandhi… - Theoretical and applied …, 2014 - Springer
Key message Impacts of population structure on the evaluation of genomic heritability and
prediction were investigated and quantified using high-density markers in diverse panels in …

Performance of genomic prediction within and across generations in maritime pine

J Bartholomé, J Van Heerwaarden, F Isik, C Boury… - BMC genomics, 2016 - Springer
Background Genomic selection (GS) is a promising approach for decreasing breeding cycle
length in forest trees. Assessment of progeny performance and of the prediction accuracy of …

Assessing predictive properties of genome-wide selection in soybeans

A Xavier, WM Muir, KM Rainey - G3: Genes, Genomes, Genetics, 2016 - academic.oup.com
Many economically important traits in plant breeding have low heritability or are difficult to
measure. For these traits, genomic selection has attractive features and may boost genetic …

Realized genetic gain in rice: Achievements from breeding programs

F Seck, G Covarrubias-Pazaran, T Gueye… - Rice, 2023 - Springer
Genetic improvement is crucial for ensuring food security globally. Indeed, plant breeding
has contributed significantly to increasing the productivity of major crops, including rice, over …

Transgressive segregation, hopeful monsters, and phenotypic selection drove rapid genetic gains and breakthroughs in predictive breeding for quantitative resistance …

SJ Knapp, GS Cole, DDA Pincot… - Horticulture …, 2024 - academic.oup.com
Two decades have passed since the strawberry (Fragaria x ananassa) disease caused by
Macrophomina phaseolina, a necrotrophic soilborne fungal pathogen, began surfacing in …

Status and perspectives of genomic selection in forest tree breeding

D Grattapaglia - Genomic selection for crop improvement: New …, 2017 - Springer
Trees have long life cycles and become reproductively active only after several years. The
progress of tree breeding programs is therefore strongly dependent on the time needed to …

Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing

O Gamal El-Dien, B Ratcliffe, J Klápště, C Chen, I Porth… - BMC genomics, 2015 - Springer
Background Genomic selection (GS) in forestry can substantially reduce the length of
breeding cycle and increase gain per unit time through early selection and greater selection …