[HTML][HTML] An overview of potential inhibitors targeting non-structural proteins 3 (PLpro and Mac1) and 5 (3CLpro/Mpro) of SARS-CoV-2

F Yan, F Gao - Computational and structural biotechnology journal, 2021 - Elsevier
There is an urgent need to develop effective treatments for coronavirus disease 2019
(COVID-19), which is caused by severe acute respiratory syndrome coronavirus 2 (SARS …

Docking covalent targets for drug discovery: stimulating the computer-aided drug design community of possible pitfalls and erroneous practices

AQK Oyedele, AT Ogunlana, ID Boyenle… - Molecular Diversity, 2023 - Springer
The continuous approval of covalent drugs in recent years for the treatment of diseases has
led to an increased search for covalent agents by medicinal chemists and computational …

Identification of potential plant bioactive as SARS-CoV-2 Spike protein and human ACE2 fusion inhibitors

R Singh, VK Bhardwaj, J Sharma, D Kumar… - Computers in Biology …, 2021 - Elsevier
The Spike receptor binding domain (S-RBD) from SARS-CoV-2, a crucial protein for the
entrance of the virus into target cells is known to cause infection by binding to a cell surface …

[HTML][HTML] In-silico evaluation of bioactive compounds from tea as potential SARS-CoV-2 nonstructural protein 16 inhibitors

R Singh, VK Bhardwaj, J Sharma, R Purohit… - Journal of traditional and …, 2022 - Elsevier
Background and aim A novel coronavirus, called the severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) has been found to cause COVID-19 in humans and some …

A computational approach for rational discovery of inhibitors for non-structural protein 1 of SARS-CoV-2

R Singh, VK Bhardwaj, P Das, R Purohit - Computers in biology and …, 2021 - Elsevier
Abstract Background Non-structural protein 1 (Nsp1), a virulence agent of SARS-CoV-2, has
emerged as an important target for drug discovery. Nsp1 shuts down the host gene function …

Design, synthesis, and molecular dynamics simulation studies of quinoline derivatives as protease inhibitors against SARS-CoV-2

VK Singh, H Chaurasia, P Kumari, A Som… - Journal of …, 2022 - Taylor & Francis
A new series of quinoline derivatives has been designed and synthesized as probable
protease inhibitors (PIs) against severe acute respiratory syndrome coronavirus 2. In silico …

Exploring conformation changes of Janus kinase 2 pseudokinase mediated by mutations through Gaussian accelerated molecular dynamics and principal component …

H Bao, W He, J Chen - Journal of Biomolecular Structure and …, 2024 - Taylor & Francis
The pseudokinase domain (JH2) of the protein tyrosine kinase (Janus kinase 2, JAK2)
regulates the activity of a tyrosine kinase domain (JH1) in JAK2, which is further affected by …

The switch states of the GDP-bound HRAS affected by point mutations: A study from Gaussian accelerated molecular dynamics simulations and free energy …

H Bao, W Wang, H Sun, J Chen - Journal of Biomolecular Structure …, 2024 - Taylor & Francis
Point mutations play a vital role in the conformational transformation of HRAS. In this work,
Gaussian accelerated molecular dynamics (GaMD) simulations followed by constructions of …

The main protease of SARS-CoV-2 as a target for phytochemicals against coronavirus

SS Issa, SV Sokornova, RR Zhidkin, TV Matveeva - Plants, 2022 - mdpi.com
In late December 2019, the first cases of COVID-19 emerged as an outbreak in Wuhan,
China that later spread vastly around the world, evolving into a pandemic and one of the …

Traditional Chinese medicines against COVID-19: a global overview

CL Yao, WL Wei, JQ Zhang, QR Bi, JY Li… - World Journal of …, 2022 - journals.lww.com
Abstract Coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory
syndrome coronavirus 2, continues to be a global concern. Traditional Chinese medicines …