[HTML][HTML] Sigma and RNA polymerase: an on-again, off-again relationship?

RA Mooney, SA Darst, R Landick - Molecular cell, 2005 - cell.com
In bacteria, a fundamental level of gene regulation occurs by competitive association of
promoter-specificity factors called σs with RNA polymerase (RNAP). This σ cycle paradigm …

Antitermination by bacteriophage λ Q protein

JW Roberts, W Yarnell, E Bartlett, J Guo… - Cold Spring Harbor …, 1998 - symposium.cshlp.org
The complexity of the qut site reflects the engagement process; qut consists of the promoter–
35 and–10 elements, a QBE (Q-binding element) between and partially overlapping these …

Direct detection of abortive RNA transcripts in vivo

SR Goldman, RH Ebright, BE Nickels - Science, 2009 - science.org
During transcription initiation in vitro, prokaryotic and eukaryotic RNA polymerase (RNAP)
can engage in abortive initiation—the synthesis and release of short (2 to 15 nucleotides) …

Function of transcription cleavage factors GreA and GreB at a regulatory pause site

MT Marr, JW Roberts - Molecular cell, 2000 - cell.com
Gre proteins of prokaryotes, and SII proteins of eukaryotes and archaea, are transcription
elongation factors that promote an endogenous transcript cleavage activity of RNA …

Processive antitermination

RA Weisberg, ME Gottesman - Journal of bacteriology, 1999 - Am Soc Microbiol
After initiating synthesis of RNA at a promoter, RNA polymerase (RNAP) normally continues
to elongate the transcript until it reaches a termination site. Important elements of termination …

The interface of ς with core RNA polymerase is extensive, conserved, and functionally specialized

MM Sharp, CL Chan, CZ Lu, MT Marr… - Genes & …, 1999 - genesdev.cshlp.org
The ς subunit of eubacterial RNA polymerase is required throughout initiation, but how it
communicates with core polymerase (α2ββ′) is poorly understood. The present work …

Structural basis of transcriptional regulation by a nascent RNA element, HK022 putRNA

S Hwang, PDB Olinares, J Lee, J Kim, BT Chait… - Nature …, 2022 - nature.com
Transcription, in which RNA polymerases (RNAPs) produce RNA from DNA, is the first step
of gene expression. As such, it is highly regulated either by trans-elements like protein …

[HTML][HTML] Transcription elongation: structural basis and mechanisms

E Nudler - Journal of molecular biology, 1999 - Elsevier
A ternary complex composed of RNA polymerase (RNAP), DNA template, and RNA
transcript is the central intermediate in the transcription cycle responsible for the elongation …

Transcription termination control in bacteria

TM Henkin - Current opinion in microbiology, 2000 - Elsevier
Transcription termination is a dynamic process and is subject to control at a number of
levels. New information about the molecular mechanisms of transcription elongation and …

Rifaximin Does Not Induce Toxin Production or Phage-Mediated Lysis of Shiga Toxin-Producing Escherichia coli

TJ Ochoa, J Chen, CM Walker… - Antimicrobial Agents …, 2007 - Am Soc Microbiol
Diarrhea in children is often caused by enteropathogen infections that might benefit from
early empirical antibiotic therapy. However, when the definition of the pathogen requires …