An introduction to the analysis of shotgun metagenomic data

TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …

Community profiling of the urinary microbiota: considerations for low-biomass samples

L Karstens, M Asquith, V Caruso… - Nature Reviews …, 2018 - nature.com
Many studies have shown that the urinary tract harbours its own microbial community known
as the urinary microbiota, which have been implicated in urinary tract disorders. This …

[PDF][PDF] MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

A Dhariwal, J Chong, S Habib, IL King… - Nucleic acids …, 2017 - academic.oup.com
The widespread application of next-generation sequencing technologies has revolutionized
microbiome research by enabling high-throughput profiling of the genetic contents of …

Global airborne bacterial community—interactions with Earth's microbiomes and anthropogenic activities

J Zhao, L Jin, D Wu, J Xie, J Li, X Fu… - Proceedings of the …, 2022 - National Acad Sciences
Airborne bacteria are an influential component of the Earth's microbiomes, but their
community structure and biogeographic distribution patterns have yet to be understood. We …

[HTML][HTML] Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid

MC Collado, S Rautava, J Aakko, E Isolauri… - Scientific reports, 2016 - nature.com
Interaction with intestinal microbes in infancy has a profound impact on health and disease
in later life through programming of immune and metabolic pathways. We collected maternal …

Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions

M Zakrzewski, C Proietti, JJ Ellis, S Hasan… - …, 2017 - academic.oup.com
Calypso is an easy-to-use online software suite that allows non-expert users to mine,
interpret and compare taxonomic information from metagenomic or 16S rDNA datasets …

Rhizosphere microbiome assemblage is affected by plant development

JM Chaparro, DV Badri, JM Vivanco - The ISME journal, 2014 - academic.oup.com
There is a concerted understanding of the ability of root exudates to influence the structure of
rhizosphere microbial communities. However, our knowledge of the connection between …

The female urinary microbiome: a comparison of women with and without urgency urinary incontinence

MM Pearce, EE Hilt, AB Rosenfeld, MJ Zilliox… - MBio, 2014 - Am Soc Microbiol
Bacterial DNA and live bacteria have been detected in human urine in the absence of
clinical infection, challenging the prevailing dogma that urine is normally sterile. Urgency …

Human gut-derived commensal bacteria suppress CNS inflammatory and demyelinating disease

A Mangalam, SK Shahi, D Luckey, M Karau, E Marietta… - Cell reports, 2017 - cell.com
The human gut is colonized by a large number of microorganisms (∼ 10 13 bacteria) that
support various physiologic functions. A perturbation in the healthy gut microbiome might …

[HTML][HTML] Blueberry supplementation influences the gut microbiota, inflammation, and insulin resistance in high-fat-diet–fed rats

S Lee, KI Keirsey, R Kirkland, ZI Grunewald… - The Journal of …, 2018 - Elsevier
Background Gut microbiota dysbiosis has been linked to obesity-associated chronic
inflammation. Microbiota manipulation may therefore affect obesity-related comorbidities …