Wheat genomic study for genetic improvement of traits in China

J Xiao, B Liu, Y Yao, Z Guo, H Jia, L Kong… - Science China Life …, 2022 - Springer
Bread wheat (Triticum aestivum L.) is a major crop that feeds 40% of the world's population.
Over the past several decades, advances in genomics have led to tremendous …

Salt stress under the scalpel–dissecting the genetics of salt tolerance

MJL Morton, M Awlia, N Al‐Tamimi, S Saade… - The Plant …, 2019 - Wiley Online Library
Salt stress limits the productivity of crops grown under saline conditions, leading to
substantial losses of yield in saline soils and under brackish and saline irrigation. Salt …

[HTML][HTML] Multiple wheat genomes reveal global variation in modern breeding

S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa… - Nature, 2020 - nature.com
Advances in genomics have expedited the improvement of several agriculturally important
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …

Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly

T Zhu, L Wang, H Rimbert, JC Rodriguez… - The Plant …, 2021 - Wiley Online Library
Until recently, achieving a reference‐quality genome sequence for bread wheat was long
thought beyond the limits of genome sequencing and assembly technology, primarily due to …

Long-read sequence assembly: a technical evaluation in barley

M Mascher, T Wicker, J Jenkins, C Plott, T Lux… - The Plant …, 2021 - academic.oup.com
Sequence assembly of large and repeat-rich plant genomes has been challenging,
requiring substantial computational resources and often several complementary sequence …

[HTML][HTML] GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

TR Ranallo-Benavidez, KS Jaron, MC Schatz - Nature communications, 2020 - nature.com
An important assessment prior to genome assembly and related analyses is genome
profiling, where the k-mer frequencies within raw sequencing reads are analyzed to estimate …

Triticum population sequencing provides insights into wheat adaptation

Y Zhou, X Zhao, Y Li, J Xu, A Bi, L Kang, D Xu… - Nature …, 2020 - nature.com
Bread wheat expanded its habitat from a core area of the Fertile Crescent to global
environments within~ 10,000 years. The genetic mechanisms of this remarkable …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants

M Van Bel, F Silvestri, EM Weitz, L Kreft… - Nucleic Acids …, 2022 - academic.oup.com
PLAZA is a platform for comparative, evolutionary, and functional plant genomics. It makes a
broad set of genomes, data types and analysis tools available to researchers through a user …

[HTML][HTML] Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

J Zhang, X Zhang, H Tang, Q Zhang, X Hua, X Ma… - Nature …, 2018 - nature.com
Modern sugarcanes are polyploid interspecific hybrids, combining high sugar content from
Saccharum officinarum with hardiness, disease resistance and ratooning of Saccharum …