A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins

AY Kawahara, C Storer, APS Carvalho… - Nature ecology & …, 2023 - nature.com
Butterflies are a diverse and charismatic insect group that are thought to have evolved with
plants and dispersed throughout the world in response to key geological events. However …

Incorporating genomics into insect conservation: Butterflies as a model group

A Sucháčková Bartoňová, D Linke… - Insect Conservation …, 2023 - Wiley Online Library
Genomic data are not yet widely used in insect conservation practice. Here, with a focus on
butterflies, we aim to identify the strengths, limitations and remaining gaps between the …

[PDF][PDF] New World geometrid moths (Lepidoptera: Geometridae): Molecular phylogeny, biogeography, taxonomic updates and description of 11 new tribes

G Brehm, L Murillo-Ramos… - Arthropod …, 2019 - researchportal.helsinki.fi
We analysed a molecular dataset of 1206 Geometroidea terminal taxa. In this paper we
focus on New World taxa, with 102 Nearctic terminal taxa (97 of which have not previously …

Anchored phylogenomics illuminates the skipper butterfly tree of life

EFA Toussaint, JW Breinholt, C Earl, AD Warren… - BMC Evolutionary …, 2018 - Springer
Abstract Background Butterflies (Papilionoidea) are perhaps the most charismatic insect
lineage, yet phylogenetic relationships among them remain incompletely studied and …

De novo genome assemblies of butterflies

EA Ellis, CG Storer, AY Kawahara - GigaScience, 2021 - academic.oup.com
Background The availability of thousands of genomes has enabled new advancements in
biology. However, many genomes have not been investigated for their quality. Here we …

A comprehensive molecular phylogeny of tiger beetles (Coleoptera, Carabidae, Cicindelinae)

HM Gough, DP Duran, AY Kawahara… - Systematic …, 2019 - Wiley Online Library
Tiger beetles are a remarkable group that captivates amateur entomologists, taxonomists
and evolutionary biologists alike. This diverse clade of beetles comprises about 2300 …

Spatial phylogenetics of butterflies in relation to environmental drivers and angiosperm diversity across North America

C Earl, MW Belitz, SW Laffan, V Barve, N Barve… - Iscience, 2021 - cell.com
Broad-scale, quantitative assessments of insect biodiversity and the factors shaping it
remain particularly poorly explored. Here we undertook a spatial phylogenetic analysis of …

Predictors of sequence capture in a large-scale anchored phylogenomics project

R Nunes, C Storer, T Doleck, AY Kawahara… - Frontiers in Ecology …, 2022 - frontiersin.org
Next-generation sequencing (NGS) technologies have revolutionized phylogenomics by
decreasing the cost and time required to generate sequence data from multiple markers or …

Evolutionary trade-offs between male secondary sexual traits revealed by a phylogeny of the hyperdiverse tribe Eumaeini (Lepidoptera: Lycaenidae)

WA Valencia-Montoya, TB Quental… - … of the Royal …, 2021 - royalsocietypublishing.org
Male butterflies in the hyperdiverse tribe Eumaeini possess an unusually complex and
diverse repertoire of secondary sexual characteristics involved in pheromone production …