Loss of FOCAD, operating via the SKI messenger RNA surveillance pathway, causes a pediatric syndrome with liver cirrhosis

R Moreno Traspas, TS Teoh, PM Wong, M Maier… - Nature …, 2022 - nature.com
Cirrhosis is usually a late-onset and life-threatening disease characterized by fibrotic
scarring and inflammation that disrupts liver architecture and function. While it is typically the …

Exploring the role of transcriptional and post‐transcriptional processes in mRNA co‐expression

Ó García‐Blay, PGA Verhagen, B Martin… - …, 2023 - Wiley Online Library
Co‐expression of two or more genes at the single‐cell level is usually associated with
functional co‐regulation. While mRNA co‐expression—measured as the correlation in …

Integrative network-based analysis on multiple Gene Expression Omnibus datasets identifies novel immune molecular markers implicated in non-alcoholic …

J Zhang, Y Shen, X Chen, M Jiang, F Yuan… - Frontiers in …, 2023 - frontiersin.org
Introduction Non-alcoholic steatohepatitis (NASH), an advanced subtype of non-alcoholic
fatty liver disease (NAFLD), has becoming the most important aetiology for end-stage liver …

Identifying multiscale translational safety biomarkers using a network-based systems approach

G Callegaro, JP Schimming, JP González, SJ Kunnen… - Iscience, 2023 - cell.com
Animal testing is the current standard for drug and chemicals safety assessment, but
hazards translation to human is uncertain. Human in vitro models can address the species …

[HTML][HTML] A network-based approach reveals the dysregulated transcriptional regulation in non-alcoholic fatty liver disease

H Yang, M Arif, M Yuan, X Li, K Shong, H Türkez… - Iscience, 2021 - cell.com
Non-alcoholic fatty liver disease (NAFLD) is a leading cause of chronic liver disease
worldwide. We performed network analysis to investigate the dysregulated biological …

Polo-like kinase-1 mediates hepatitis C virus-induced cell migration, a drug target for liver cancer

KE El-Khobar, E Tay, E Diefenbach… - Life Science …, 2023 - life-science-alliance.org
Polo-like kinase 1 (PLK1) is a regulator of cell mitosis and cytoskeletal dynamics. PLK1
overexpression in liver cancer is associated with tumour progression, metastasis, and …

Critical reasoning on the co-expression module QTL in the dorsolateral prefrontal cortex

AC Cote, HE Young, LM Huckins - Human Genetics and Genomics …, 2024 - cell.com
Expression quantitative trait locus (eQTL) analysis is a popular method of gaining insight
into the function of regulatory variation. While cis-eQTL resources have been instrumental in …

[HTML][HTML] Insight on the hub gene associated signatures and potential therapeutic agents in epilepsy and glioma

K Zhao, X Bai, X Wang, Y Cao, L Zhang, W Li… - Brain Research …, 2023 - Elsevier
Objective The relationship between epilepsy and glioma has long been widely recognized,
but the mechanisms of interaction remain unclear. This study aimed to investigate the …

Found in translation—core network preservation across liver diseases and species

M Blencowe, X Yang - Cell Reports Medicine, 2021 - cell.com
Esmaili et al. 1 conducted co-expression network analysis to uncover core homeostatic
modules critical to a broad spectrum of liver diseases in mouse and human. Perturbation …

RNA degradation heavily impacts mRNA co-expression

ÓG Blay, P Verhagen, B Martin, MMK Hansen - bioRxiv, 2022 - biorxiv.org
Co-expression of genes measured with single-cell RNA sequencing is extensively utilized to
understand the principles of gene regulation within and across cell types and species. It is …