A primer to frequent itemset mining for bioinformatics

S Naulaerts, P Meysman, W Bittremieux… - Briefings in …, 2015 - academic.oup.com
Over the past two decades, pattern mining techniques have become an integral part of many
bioinformatics solutions. Frequent itemset mining is a popular group of pattern mining …

Biological knowledge management: the emerging role of the Semantic Web technologies

E Antezana, M Kuiper, V Mironov - Briefings in bioinformatics, 2009 - academic.oup.com
New knowledge is produced at a continuously increasing speed, and the list of papers,
databases and other knowledge sources that a researcher in the life sciences needs to cope …

Gene association analysis: a survey of frequent pattern mining from gene expression data

R Alves, DS Rodriguez-Baena… - Briefings in …, 2010 - academic.oup.com
Establishing an association between variables is always of interest in genomic studies.
Generation of DNA microarray gene expression data introduces a variety of data analysis …

Proline Accumulation Is Not Correlated with Saline‐Alkaline Stress Tolerance in Rice Seedlings

BS Lv, HY Ma, XW Li, LX Wei, HY Lv… - Agronomy …, 2015 - Wiley Online Library
Proline accumulation is a common physiological response of plants to various
environmental stresses. However, the physiological importance of proline accumulation in …

Biomedical application of fuzzy association rules for identifying breast cancer biomarkers

FJ Lopez, M Cuadros, C Cano, A Concha… - Medical & biological …, 2012 - Springer
Current breast cancer research involves the study of many different prognosis factors:
primary tumor size, lymph node status, tumor grade, tumor receptor status, p53, and ki67 …

Mining frequent patterns and association rules using similarities

AY Rodríguez-González, JF Martínez-Trinidad… - Expert Systems with …, 2013 - Elsevier
Most of the current algorithms for mining association rules assume that two object
subdescriptions are similar when they are exactly equal, but in many real world problems …

Closed frequent similar pattern mining: Reducing the number of frequent similar patterns without information loss

AY Rodríguez-González, F Lezama… - Expert Systems with …, 2018 - Elsevier
Frequent pattern mining is considered a key task to discover useful information. Despite the
quality of solutions given by frequent pattern mining algorithms, most of them face the …

Association rule mining of cellular responses induced by metal and metal oxide nanoparticles

R Liu, B France, S George, R Rallo, H Zhang, T Xia… - Analyst, 2014 - pubs.rsc.org
Relationships among fourteen different biological responses (including ten signaling
pathway activities and four cytotoxicity effects) of murine macrophage (RAW264. 7) and …

Analyzing gene expression from relative codon usage bias in Yeast genome: a statistical significance and biological relevance

S Das, U Roymondal, S Sahoo - Gene, 2009 - Elsevier
Based on the hypothesis that highly expressed genes are often characterized by strong
compositional bias in terms of codon usage, there are a number of measures currently in …

Fuzzy Correlated Association Mining: Selecting altered associations among the genes, and some possible marker genes mediating certain cancers

A Ghosh, RK De - Applied Soft Computing, 2016 - Elsevier
Association mining is a well explored topic applied to various fields. In this article, the
associations among the genes have been identified from microarray gene expression data …