[HTML][HTML] Dual regularized unsupervised feature selection based on matrix factorization and minimum redundancy with application in gene selection

F Saberi-Movahed, M Rostami, K Berahmand… - Knowledge-Based …, 2022 - Elsevier
Gene expression data have become increasingly important in machine learning and
computational biology over the past few years. In the field of gene expression analysis …

[HTML][HTML] Gene selection for microarray data classification via multi-objective graph theoretic-based method

M Rostami, S Forouzandeh, K Berahmand… - Artificial Intelligence in …, 2022 - Elsevier
In recent decades, the improvement of computer technology has increased the growth of
high-dimensional microarray data. Thus, data mining methods for DNA microarray data …

Differentiating COPD and asthma using quantitative CT imaging and machine learning

A Moslemi, K Kontogianni, J Brock… - European …, 2022 - Eur Respiratory Soc
Background There are similarities and differences between chronic obstructive pulmonary
disease (COPD) and asthma patients in terms of computed tomography (CT) disease …

Tuftelin1 drives experimental pulmonary fibrosis progression by facilitating stress fiber assembly

C Niu, K Xu, Y Hu, Y Jia, Y Yang, X Pan, R Wan… - Respiratory …, 2023 - Springer
Background Idiopathic pulmonary fibrosis (IPF) is a progressive interstitial lung disease
(ILD) with unknown etiology, characterized by sustained damage repair of epithelial cells …

Gene selection in binary classification problems within functional genomics experiments via robust Fisher Score

M Hamraz, Z Khan, DM Khan, N Gul, A Ali… - IEEE …, 2022 - ieeexplore.ieee.org
This study proposes a supervised feature selection technique for classification in high
dimensional binary class problems by adding robustness in the conventional Fisher Score …

[HTML][HTML] Transcriptomic analysis of World Trade Center particulate Matter-induced pulmonary inflammation and drug treatments

YT Chen, J Li, JN Chang, YC Luo, W Yu… - Environment …, 2023 - Elsevier
Over 400,000 people are estimated to have been exposed to World Trade Center particulate
matter (WTC PM) since the attack on the Twin Towers in Lower Manhattan on September 11 …

A dynamic recursive feature elimination framework (dRFE) to further refine a set of OMIC biomarkers

Y Han, L Huang, F Zhou - Bioinformatics, 2021 - academic.oup.com
Motivation A feature selection algorithm may select the subset of features with the best
associations with the class labels. The recursive feature elimination (RFE) is a heuristic …

Robust proportional overlapping analysis for feature selection in binary classification within functional genomic experiments

M Hamraz, N Gul, M Raza, DM Khan, U Khalil… - PeerJ Computer …, 2021 - peerj.com
In this paper, a novel feature selection method called Robust Proportional Overlapping
Score (RPOS), for microarray gene expression datasets has been proposed, by utilizing the …

Automated detection of bioimages using novel deep feature fusion algorithm and effective high-dimensional feature selection approach

R Maurya, VK Pathak, R Burget, MK Dutta - Computers in Biology and …, 2021 - Elsevier
The classification of bioimages plays an important role in several biological studies, such as
subcellular localisation, phenotype identification and other types of histopathological …

Radiotranscriptomics of non-small cell lung carcinoma for assessing high-level clinical outcomes using a machine learning-derived multi-modal signature

E Trivizakis, NM Koutroumpa, J Souglakos… - BioMedical Engineering …, 2023 - Springer
Background Multi-omics research has the potential to holistically capture intra-tumor
variability, thereby improving therapeutic decisions by incorporating the key principles of …