Small molecule-inducible gene regulatory systems in mammalian cells: progress and design principles

M Siddiqui, C Tous, WW Wong - Current opinion in biotechnology, 2022 - Elsevier
Highlights•Inducible gene regulation has been a critical tool in interrogating biological
systems.•Small-molecule induction enables regulation at the DNA, RNA, and protein …

Functional synthetic biology

I Aldulijan, J Beal, S Billerbeck, J Bouffard… - Synthetic …, 2023 - academic.oup.com
Synthetic biologists have made great progress over the past decade in developing methods
for modular assembly of genetic sequences and in engineering biological systems with a …

Building the plant SynBio toolbox through combinatorial analysis of DNA regulatory elements

AC Pfotenhauer, A Occhialini, MA Nguyen… - ACS synthetic …, 2022 - ACS Publications
While the installation of complex genetic circuits in microorganisms is relatively routine, the
synthetic biology toolbox is severely limited in plants. Of particular concern is the absence of …

Meeting measurement precision requirements for effective engineering of genetic regulatory networks

J Beal, B Teague, JT Sexton, S Castillo-Hair… - ACS synthetic …, 2022 - ACS Publications
Reliable, predictable engineering of cellular behavior is one of the key goals of synthetic
biology. As the field matures, biological engineers will become increasingly reliant on …

DOSE-L1000: unveiling the intricate landscape of compound-induced transcriptional changes

J Wang, S Novick - Bioinformatics, 2023 - academic.oup.com
Abstract Motivation The LINCS L1000 project has collected gene expression profiles for
thousands of compounds across a wide array of concentrations, cell lines, and time points …

Light-inducible tools for control of bacterial gene expression and antibiotic resistance

MB Sheets - 2023 - search.proquest.com
Antibiotics and their corresponding resistance genes act as a tool to control bacterial
survival. Antibiotic resistance is used to select for desired engineered cells, and study how …

Recent advances in synNotch for biomedical application

Z Jiang, L Song, Q Zhang, H Sui, C Gao - Authorea Preprints, 2024 - advance.sagepub.com
Synthetic Notch receptor is flourishing as a powerful tool for the accurate control of cell
functions. It is a sensing receptor system developed based on the Notch signaling pathway …

Programmable Mixed-Signal Biocomputers in Mammalian Cells

JH Letendre, BH Weinberg, M Mendes, JM Marano… - bioRxiv, 2022 - biorxiv.org
Living cells perform sophisticated computations that guide them toward discrete states.
Synthetic genetic circuits are powerful tools for programing these computations, where …

Genetic Circuit Designs to Improve Synthetic Biological Signaling in Mammalian Cells

JH Letendre - 2022 - search.proquest.com
Multicellular organisms perform sophisticated computations on a myriad of environmental
cues and produce many discrete cell states in response. These phenotypes are often …

Flow Cytometry Quantification of Transient Transfections in Mammalian Cells

J Beal - Mammalian Synthetic Systems, 2012 - Springer
Flow cytometry is a powerful quantitative assay supporting high-throughput collection of
single-cell data with a high dynamic range. For flow cytometry to yield reproducible data with …