From NWChem to NWChemEx: Evolving with the computational chemistry landscape

K Kowalski, R Bair, NP Bauman, JS Boschen… - Chemical …, 2021 - ACS Publications
Since the advent of the first computers, chemists have been at the forefront of using
computers to understand and solve complex chemical problems. As the hardware and …

Evaluating HPC networks via simulation of parallel workloads

N Jain, A Bhatele, S White, T Gamblin… - SC'16: Proceedings of …, 2016 - ieeexplore.ieee.org
This paper presents an evaluation and comparison of three topologies that are popular for
building interconnection networks in large-scale supercomputers: torus, fat-tree, and …

Auto-tuning parameter choices in hpc applications using bayesian optimization

H Menon, A Bhatele, T Gamblin - 2020 IEEE International …, 2020 - ieeexplore.ieee.org
High performance computing applications, runtimes, and platforms are becoming more
configurable to enable applications to obtain better performance. As a result, users are …

[HTML][HTML] Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms

R Schade, T Kenter, H Elgabarty, M Lass, O Schütt… - Parallel Computing, 2022 - Elsevier
We push the boundaries of electronic structure-based ab-initio molecular dynamics (AIMD)
beyond 100 million atoms. This scale is otherwise barely reachable with classical force-field …

Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics

R Schade, T Kenter, H Elgabarty… - … Journal of High …, 2023 - journals.sagepub.com
The non-orthogonal local submatrix method applied to electronic structure–based molecular
dynamics simulations is shown to exceed 1.1 EFLOP/s in FP16/FP32-mixed floating-point …

Bootstrapping parameter space exploration for fast tuning

JJ Thiagarajan, N Jain, R Anirudh, A Gimenez… - Proceedings of the …, 2018 - dl.acm.org
The task of tuning parameters for optimizing performance or other metrics of interest such as
energy, variability, etc. can be resource and time consuming. Presence of a large parameter …

A new kid on the block: application of Julia to Hartree–Fock calculations

D Poole, JL Galvez Vallejo… - Journal of Chemical …, 2020 - ACS Publications
In the field of electronic structure theory, many optimizations, ranging from accelerator
offloading to exploitation of modern programming constructs, have been used to improve the …

Charmpy: A python parallel programming model

JJ Galvez, K Senthil, L Kale - 2018 IEEE International …, 2018 - ieeexplore.ieee.org
Parallel programming can be extremely challenging. Programming models have been
proposed to simplify this task, but wide acceptance of these remains elusive for many …

FlipBack: automatic targeted protection against silent data corruption

X Ni, LV Kale - SC'16: Proceedings of the International …, 2016 - ieeexplore.ieee.org
The decreasing size of transistors has been critical to the increase in capacity of
supercomputers. The smaller the transistors are, less energy is required to flip a bit, and thus …

Towards pdes in a message-driven paradigm: A preliminary case study using charm++

E Mikida, N Jain, L Kale, E Gonsiorowski… - Proceedings of the …, 2016 - dl.acm.org
Discrete event simulations (DES) are central to exploration of" what-if" scenarios in many
domains including networks, storage devices, and chip design. Accurate simulation of …