Roadblocks and resolutions in eukaryotic translation

AP Schuller, R Green - Nature Reviews Molecular Cell Biology, 2018 - nature.com
During protein synthesis, ribosomes encounter many roadblocks, the outcomes of which are
largely determined by substrate availability, amino acid features and reaction kinetics …

Translation elongation and recoding in eukaryotes

TE Dever, JD Dinman, R Green - Cold Spring Harbor …, 2018 - cshperspectives.cshlp.org
In this review, we highlight the current understanding of translation elongation and recoding
in eukaryotes. In addition to providing an overview of the process, recent advances in our …

Short tRNA anticodon stem and mutant eRF1 allow stop codon reassignment

A Kachale, Z Pavlíková, A Nenarokova, A Roithová… - Nature, 2023 - nature.com
Cognate tRNAs deliver specific amino acids to translating ribosomes according to the
standard genetic code, and three codons with no cognate tRNAs serve as stop codons …

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

D Faktorová, RER Nisbet, JA Fernández Robledo… - Nature …, 2020 - nature.com
Diverse microbial ecosystems underpin life in the sea. Among these microbes are many
unicellular eukaryotes that span the diversity of the eukaryotic tree of life. However, genetic …

Exploiting non-canonical translation to identify new targets for T cell-based cancer immunotherapy

CM Laumont, C Perreault - Cellular and molecular life sciences, 2018 - Springer
Cryptic MHC I-associated peptides (MAPs) are produced via two mechanisms: translation of
protein-coding genes in non-canonical reading frames and translation of allegedly non …

Biodiversity-based development and evolution: the emerging research systems in model and non-model organisms

L Zhao, F Gao, S Gao, Y Liang, H Long, Z Lv… - Science China Life …, 2021 - Springer
Evolutionary developmental biology, or Evo-Devo for short, has become an established field
that, broadly speaking, seeks to understand how changes in development drive major …

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

DE Andreev, PBF O'Connor, G Loughran… - Nucleic acids …, 2017 - academic.oup.com
Abstract The development of Ribosome Profiling (RiboSeq) has revolutionized functional
genomics. RiboSeq is based on capturing and sequencing of the mRNA fragments enclosed …

Rewriting the genetic code

T Mukai, MJ Lajoie, M Englert… - Annual review of …, 2017 - annualreviews.org
The genetic code—the language used by cells to translate their genomes into proteins that
perform many cellular functions—is highly conserved throughout natural life. Rewriting the …

Determinants of genome-wide distribution and evolution of uORFs in eukaryotes

H Zhang, Y Wang, X Wu, X Tang, C Wu, J Lu - Nature Communications, 2021 - nature.com
Upstream open reading frames (uORFs) play widespread regulatory functions in modulating
mRNA translation in eukaryotes, but the principles underlying the genomic distribution and …

Ribosome decision graphs for the representation of eukaryotic RNA translation complexity

JAS Tierney, M Świrski, H Tjeldnes, JM Mudge… - Genome …, 2024 - genome.cshlp.org
The application of ribosome profiling has revealed an unexpected abundance of translation
in addition to that responsible for the synthesis of previously annotated protein-coding …