Effects of selection at linked sites on patterns of genetic variability

B Charlesworth, JD Jensen - Annual review of ecology …, 2021 - annualreviews.org
Patterns of variation and evolution at a given site in a genome can be strongly influenced by
the effects of selection at genetically linked sites. In particular, the recombination rates of …

Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - Am Soc Microbiol
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

A genome-wide association study of serum proteins reveals shared loci with common diseases

A Gudjonsson, V Gudmundsdottir, GT Axelsson… - Nature …, 2022 - nature.com
With the growing number of genetic association studies, the genotype-phenotype atlas has
become increasingly more complex, yet the functional consequences of most disease …

Genome interpretation using in silico predictors of variant impact

P Katsonis, K Wilhelm, A Williams, O Lichtarge - Human genetics, 2022 - Springer
Estimating the effects of variants found in disease driver genes opens the door to
personalized therapeutic opportunities. Clinical associations and laboratory experiments …

Emergent evolutionary forces in spatial models of luminal growth and their application to the human gut microbiota

OM Ghosh, BH Good - … of the National Academy of Sciences, 2022 - National Acad Sciences
The genetic composition of the gut microbiota is constantly reshaped by ecological and
evolutionary forces. These strain-level dynamics are challenging to understand because …

Unraveling the complex hybrid ancestry and domestication history of cultivated strawberry

MA Hardigan, A Lorant, DDA Pincot… - Molecular biology …, 2021 - academic.oup.com
Cultivated strawberry (Fragaria× ananassa) is one of our youngest domesticates, originating
in early eighteenth-century Europe from spontaneous hybrids between wild allo-octoploid …

Complete chloroplast genomes provide insights into evolution and phylogeny of Zingiber (Zingiberaceae)

D Jiang, X Cai, M Gong, M Xia, H Xing, S Dong, S Tian… - BMC genomics, 2023 - Springer
Abstract Background The genus Zingiber of the Zingiberaceae is distributed in tropical,
subtropical, and in Far East Asia. This genus contains about 100–150 species, with many …

On the prospect of achieving accurate joint estimation of selection with population history

P Johri, A Eyre-Walker, RN Gutenkunst… - Genome biology and …, 2022 - academic.oup.com
As both natural selection and population history can affect genome-wide patterns of
variation, disentangling the contributions of each has remained as a major challenge in …

Evolutionary dynamics of neoantigens in growing tumors

E Lakatos, MJ Williams, RO Schenck, WCH Cross… - Nature …, 2020 - nature.com
Cancers accumulate mutations that lead to neoantigens, novel peptides that elicit an
immune response, and consequently undergo evolutionary selection. Here we establish …

Sweepstakes reproductive success via pervasive and recurrent selective sweeps

E Árnason, J Koskela, K Halldórsdóttir, B Eldon - Elife, 2023 - elifesciences.org
Highly fecund natural populations characterized by high early mortality abound, yet our
knowledge about their recruitment dynamics is somewhat rudimentary. This knowledge gap …