Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …

Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus

LS Weyrich, S Duchene, J Soubrier, L Arriola, B Llamas… - Nature, 2017 - nature.com
Recent genomic data have revealed multiple interactions between Neanderthals and
modern humans, but there is currently little genetic evidence regarding Neanderthal …

The role of gut dysbiosis in the pathophysiology of neuropsychiatric disorders

N Anand, VR Gorantla, SB Chidambaram - Cells, 2022 - mdpi.com
Mounting evidence shows that the complex gut microbial ecosystem in the human
gastrointestinal (GI) tract regulates the physiology of the central nervous system (CNS) via …

Promises and pitfalls of using high‐throughput sequencing for diet analysis

A Alberdi, O Aizpurua, K Bohmann… - Molecular ecology …, 2019 - Wiley Online Library
The application of high‐throughput sequencing‐based approaches to DNA extracted from
environmental samples such as gut contents and faeces has become a popular tool for …

Unraveling core functional microbiota in traditional solid-state fermentation by high-throughput amplicons and metatranscriptomics sequencing

Z Song, H Du, Y Zhang, Y Xu - Frontiers in microbiology, 2017 - frontiersin.org
Fermentation microbiota is specific microorganisms that generate different types of
metabolites in many productions. In traditional solid-state fermentation, the structural …

Ancient plant DNA in lake sediments

L Parducci, KD Bennett, GF Ficetola, IG Alsos… - New …, 2017 - Wiley Online Library
Contents Summary 924 I. Introduction 925 II. Environmental and temporal limits for survival
of aDNA 925 III. Lake sediments 927 IV. Perspective for plant aDNA research 929 V …

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

G Lear, I Dickie, J Banks, S Boyer, HL Buckley… - New Zealand Journal of …, 2018 - JSTOR
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …

[HTML][HTML] Breast tissue, oral and urinary microbiomes in breast cancer

H Wang, J Altemus, F Niazi, H Green, BC Calhoun… - Oncotarget, 2017 - ncbi.nlm.nih.gov
It has long been proposed that the gut microbiome contributes to breast carcinogenesis by
modifying systemic estrogen levels. This is often cited as a possible mechanism linking …

A robust framework for microbial archaeology

C Warinner, A Herbig, A Mann… - Annual review of …, 2017 - annualreviews.org
Microbial archaeology is flourishing in the era of high-throughput sequencing, revealing the
agents behind devastating historical plagues, identifying the cryptic movements of …