[HTML][HTML] Encoding and decoding cellular information through signaling dynamics

JE Purvis, G Lahav - Cell, 2013 - cell.com
A growing number of studies are revealing that cells can send and receive information by
controlling the temporal behavior (dynamics) of their signaling molecules. In this Review, we …

Functional roles of pulsing in genetic circuits

JH Levine, Y Lin, MB Elowitz - Science, 2013 - science.org
A fundamental problem in biology is to understand how genetic circuits implement core
cellular functions. Time-lapse microscopy techniques are beginning to provide a direct view …

Dynamic ligand discrimination in the notch signaling pathway

N Nandagopal, LA Santat, L LeBon, D Sprinzak… - Cell, 2018 - cell.com
The Notch signaling pathway comprises multiple ligands that are used in distinct biological
contexts. In principle, different ligands could activate distinct target programs in signal …

[HTML][HTML] Dynamics and spatial genomics of the nascent transcriptome by intron seqFISH

S Shah, Y Takei, W Zhou, E Lubeck, J Yun, CHL Eng… - Cell, 2018 - cell.com
Visualization of the transcriptome and the nuclear organization in situ has been challenging
for single-cell analysis. Here, we demonstrate a multiplexed single-molecule in situ method …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

Omnitemporal choreographies of all five STIM/Orai and IP3Rs underlie the complexity of mammalian Ca2+ signaling

SM Emrich, RE Yoast, P Xin, V Arige, LE Wagner… - Cell reports, 2021 - cell.com
Summary Stromal-interaction molecules (STIM1/2) sense endoplasmic reticulum (ER) Ca 2+
depletion and activate Orai channels. However, the choreography of interactions between …

The native ORAI channel trio underlies the diversity of Ca2+ signaling events

RE Yoast, SM Emrich, X Zhang, P Xin… - Nature …, 2020 - nature.com
The essential role of ORAI1 channels in receptor-evoked Ca2+ signaling is well understood,
yet little is known about the physiological activation of the ORAI channel trio natively …

[HTML][HTML] Noise facilitates transcriptional control under dynamic inputs

RA Kellogg, S Tay - Cell, 2015 - cell.com
Cells must respond sensitively to time-varying inputs in complex signaling environments. To
understand how signaling networks process dynamic inputs into gene expression outputs …

Engineering AraC to make it responsive to light instead of arabinose

E Romano, A Baumschlager, EB Akmeric… - Nature chemical …, 2021 - nature.com
The l-arabinose-responsive AraC and its cognate PBAD promoter underlie one of the most
often used chemically inducible prokaryotic gene expression systems in microbiology and …

Phagocytosis‐dependent activation of a TLR9–BTK–calcineurin–NFAT pathway co‐ordinates innate immunity to Aspergillus fumigatus

S Herbst, A Shah, M Mazon Moya… - EMBO molecular …, 2015 - embopress.org
Transplant recipients on calcineurin inhibitors are at high risk of invasive fungal infection.
Understanding how calcineurin inhibitors impair fungal immunity is a key priority for defining …