The renaissance of metal–pyrimidine nucleobase coordination chemistry

B Lippert, PJ Sanz Miguel - Accounts of Chemical Research, 2016 - ACS Publications
Conspectus The significance of metal ions for the function and properties of DNA and RNA,
long seen primarily under biological aspects and medicinal uses, has recently gained a …

[HTML][HTML] Non-G base tetrads

N Escaja, B Mir, M Garavís, C González - Molecules, 2022 - mdpi.com
Tetrads (or quartets) are arrangements of four nucleobases commonly involved in the
stability of four-stranded nucleic acids structures. Four-stranded or quadruplex structures …

[HTML][HTML] Adenine versus guanine quartets in aqueous solution: dispersion-corrected DFT study on the differences in π-stacking and hydrogen-bonding behavior

C Fonseca Guerra, T van der Wijst, J Poater… - Theoretical Chemistry …, 2010 - Springer
We have investigated the performance of the dispersion-corrected density functionals (BLYP-
D, BP86-D and PBE-D) and the widely used B3LYP functional for describing the hydrogen …

[HTML][HTML] Molecular dynamics simulations of guanine quadruplex loops: advances and force field limitations

E Fadrná, N Špačková, R Štefl, J Koča, TE Cheatham… - Biophysical journal, 2004 - cell.com
A computational analysis of d (GGGGTTTTGGGG) 2 guanine quadruplexes containing either
lateral or diagonal four-thymidine loops was carried out using molecular dynamics (MD) …

Structural insights into the anti-cancer activity of quercetin on G-tetrad, mixed G-tetrad, and G-quadruplex DNA using quantum chemical and molecular dynamics …

S Vinnarasi, R Radhika, S Vijayakumar… - Journal of …, 2020 - Taylor & Francis
Human telomerase referred as 'terminal transferase'is a nucleoprotein enzyme which
inhibits the disintegration of telomere length and act as a drug target for the anticancer …

Synthesis and characterization of monomolecular DNA G-quadruplexes formed by tetra-end-linked oligonucleotides

G Oliviero, J Amato, N Borbone, A Galeone… - Bioconjugate …, 2006 - ACS Publications
Guanine-rich DNA sequences are widely dispersed in the eukaryotic genome and are
abundant in regions with relevant biological significance. They can form quadruplex …

Interaction of sodium and potassium ions with sandwiched cytosine‐, guanine‐, thymine‐, and uracil‐base tetrads

M Meyer, A Hocquet, J Sühnel - Journal of computational …, 2005 - Wiley Online Library
Nucleic acid tetraplexes and lipophilic self‐assembling G‐quadruplexes contain stacked
base tetrads with intercalated metal ions as basic building blocks. Thus far, quantum …

Synthesis and characterization of a bunchy oligonucleotide forming a monomolecular parallel quadruplex structure in solution

G Oliviero, N Borbone, A Galeone, M Varra, G Piccialli… - Tetrahedron letters, 2004 - Elsevier
A cluster of four d (TG4T) hexanucleotides with the 3′-ends linked together by a bunchy
spacer has been synthesized and shown to form a monomolecular parallel quadruplex in …

Interaction of Cyclic Cytosine-, Guanine-, Thymine-, Uracil- and Mixed Guanine-Cytosine Base Tetrads with K+, Na+ and Li+ Ions—A Density Functional Study

M Meyer, J Sühnel - Journal of Biomolecular Structure and …, 2003 - Taylor & Francis
We have carried out B3LYP hybrid density functional studies of complexes formed by cyclic
cytosine-, guanine-, thymine-, uracil-and mixed guanine cytosine-tetrads with Li+, Na+ and …

Self-association of isoguanine nucleobases and molecular recognition of alkaline ions: tetrad vs pentad structures

M Meyer, J Sühnel - The Journal of Physical Chemistry A, 2003 - ACS Publications
The formation of both isoguanine tetrad and isoguanine pentad alkali metal ion complexes
has been reported in experimental studies. We have performed B3LYP hybrid density …