The Nipponbare genome and the next-generation of rice genomics research in Japan

T Matsumoto, J Wu, T Itoh, H Numa, B Antonio… - Rice, 2016 - Springer
The map-based genome sequence of the japonica rice cultivar Nipponbare remains to date
as the only monocot genome that has been sequenced to a high-quality level. It has become …

A stepwise route to domesticate rice by controlling seed shattering and panicle shape

R Ishikawa, CC Castillo, TM Htun… - Proceedings of the …, 2022 - National Acad Sciences
Asian rice (Oryza sativa L.) is consumed by more than half of the world's population. Despite
its global importance, the process of early rice domestication remains unclear. During …

Characterization of OsLCT1, a cadmium transporter from indica rice (Oryza sativa)

S Uraguchi, T Kamiya, S Clemens… - Physiologia …, 2014 - Wiley Online Library
Molecular understanding of cadmium (Cd) transport in indica rice (Oryza sativa) is still
insufficient, although indica rice generally has a potential to accumulate higher Cd in shoots …

Single marker and haplotype-based association analysis of semolina and pasta colour in elite durum wheat breeding lines using a high-density consensus map

A N'Diaye, JK Haile, AT Cory, FR Clarke, JM Clarke… - PLoS …, 2017 - journals.plos.org
Association mapping is usually performed by testing the correlation between a single marker
and phenotypes. However, because patterns of variation within genomes are inherited as …

Whole-genome sequencing of the NARO World Rice Core Collection (WRC) as the basis for diversity and association studies

N Tanaka, M Shenton, Y Kawahara… - Plant and Cell …, 2020 - academic.oup.com
Genebanks provide access to diverse materials for crop improvement. To utilize and
evaluate them effectively, core collections, such as the World Rice Core Collection (WRC) in …

Genetic dissection of ozone tolerance in rice (Oryza sativa L.) by a genome-wide association study

Y Ueda, F Frimpong, Y Qi, E Matthus… - Journal of …, 2015 - academic.oup.com
Tropospheric ozone causes various negative effects on plants and affects the yield and
quality of agricultural crops. Here, we report a genome-wide association study (GWAS) in …

Increase of fungal pathogenicity and role of plant glutamine in nitrogen-induced susceptibility (NIS) to rice blast

H Huang, T Nguyen Thi Thu, X He, A Gravot… - Frontiers in plant …, 2017 - frontiersin.org
Highlight Modifications in glutamine synthetase OsGS1-2 expression and fungal
pathogenicity underlie nitrogen-induced susceptibility to rice blast. Understanding why …

Loci, genes, and mechanisms associated with tolerance to ferrous iron toxicity in rice (Oryza sativa L.)

E Matthus, LB Wu, Y Ueda, S Höller, M Becker… - Theoretical and Applied …, 2015 - Springer
Key message A genome-wide association study in rice yielded loci and candidate genes
associated with tolerance to iron toxicity, and revealed biochemical mechanisms associated …

Construction of Pseudomolecule Sequences of the aus Rice Cultivar Kasalath for Comparative Genomics of Asian Cultivated Rice

H Sakai, H Kanamori, Y Arai-Kichise… - DNA …, 2014 - academic.oup.com
Having a deep genetic structure evolved during its domestication and adaptation, the Asian
cultivated rice (Oryza sativa) displays considerable physiological and morphological …

Investigation of the genetic diversity of a rice core collection of Japanese landraces using whole-genome sequencing

N Tanaka, M Shenton, Y Kawahara… - Plant and Cell …, 2020 - academic.oup.com
Abstract The Rice Core Collection of Japanese Landraces (JRC) consisting of 50
accessions was developed by the genebank at the National Agriculture and Food Research …