Calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for PP3/BP4 criteria

V Pejaver, AB Byrne, BJ Feng, KA Pagel… - The American Journal of …, 2022 - cell.com
Summary Recommendations from the American College of Medical Genetics and Genomics
and the Association for Molecular Pathology (ACMG/AMP) for interpreting sequence variants …

Computational approaches for predicting variant impact: An overview from resources, principles to applications

Y Liu, WSB Yeung, PCN Chiu, D Cao - Frontiers in genetics, 2022 - frontiersin.org
One objective of human genetics is to unveil the variants that contribute to human diseases.
With the rapid development and wide use of next-generation sequencing (NGS), massive …

Benign SNPs in the Coding Region of TP53: Finding the Needles in a Haystack of Pathogenic Variants

T Soussi - Cancer Research, 2022 - AACR
With the recent explosion in high-throughput genotyping technology, the amount and quality
of SNP data have increased exponentially, facilitating the discovery of multiple uncommon …

Saturation-scale functional evidence supports clinical variant interpretation in Lynch syndrome

A Scott, F Hernandez, A Chamberlin, C Smith, R Karam… - Genome Biology, 2022 - Springer
Background Lynch syndrome (LS) is a cancer predisposition syndrome affecting more than
1 in every 300 individuals worldwide. Clinical genetic testing for LS can be life-saving but is …

[HTML][HTML] Evaluating the impact of in silico predictors on clinical variant classification

EH Wilcox, M Sarmady, B Wulf, MW Wright… - Genetics in …, 2022 - Elsevier
Abstract Purpose According to the American College of Medical Genetics and
Genomics/Association of Medical Pathology (ACMG/AMP) guidelines, in silico evidence is …

Evidence-based calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for clinical use of PP3/BP4 criteria

V Pejaver, AB Byrne, BJ Feng, KA Pagel, SD Mooney… - bioRxiv, 2022 - biorxiv.org
ABSTRACT Recommendations from the American College of Medical Genetics and
Genomics and the Association for Molecular Pathology (ACMG/AMP) for interpreting …

Unexpected identification of obesity-associated mutations in LEP and MC4R genes in patients with anorexia nervosa

LS Rajcsanyi, Y Zheng, B Herpertz-Dahlmann… - Scientific Reports, 2024 - nature.com
Mutations leading to a reduced or loss of function in genes of the leptin-melanocortin system
confer a risk for monogenic forms of obesity. Yet, gain of function variants in the …

[HTML][HTML] Specifications of the ACMG/AMP variant curation guidelines for the analysis of germline ATM sequence variants

ME Richardson, M Holdren, T Brannan… - The American Journal of …, 2024 - cell.com
Summary The ClinGen Hereditary Breast, Ovarian, and Pancreatic Cancer (HBOP) Variant
Curation Expert Panel (VCEP) is composed of internationally recognized experts in clinical …

Evaluating the use of paralogous protein domains to increase data availability for missense variant classification

AC Gunning, CF Wright - Genome Medicine, 2023 - Springer
Background Classification of rare missense variants remains an ongoing challenge in
genomic medicine. Evidence of pathogenicity is often sparse, and decisions about how to …

vaRHC: an R package for semi-automation of variant classification in hereditary cancer genes according to ACMG/AMP and gene-specific ClinGen guidelines

E Munté, L Feliubadaló, M Pineda, E Tornero… - …, 2023 - academic.oup.com
Motivation Germline variant classification allows accurate genetic diagnosis and risk
assessment. However, it is a tedious iterative process integrating information from several …