Soil microbial network complexity predicts ecosystem function along elevation gradients on the Tibetan Plateau

W Chen, J Wang, X Chen, Z Meng, R Xu… - Soil Biology and …, 2022 - Elsevier
The contributions of soil microbial diversity for the multifunctionality of ecosystem functions
remain little understood despite the well-known importance of soil microbial communities for …

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

E Rheinbay, MM Nielsen, F Abascal, JA Wala… - Nature, 2020 - nature.com
The discovery of drivers of cancer has traditionally focused on protein-coding genes,,–. Here
we present analyses of driver point mutations and structural variants in non-coding regions …

Human-interpretable image features derived from densely mapped cancer pathology slides predict diverse molecular phenotypes

JA Diao, JK Wang, WF Chui, V Mountain… - Nature …, 2021 - nature.com
Computational methods have made substantial progress in improving the accuracy and
throughput of pathology workflows for diagnostic, prognostic, and genomic prediction. Still …

Multi-stage differentiation defines melanoma subtypes with differential vulnerability to drug-induced iron-dependent oxidative stress

J Tsoi, L Robert, K Paraiso, C Galvan, KM Sheu, J Lay… - Cancer cell, 2018 - cell.com
Malignant transformation can result in melanoma cells that resemble different stages of their
embryonic development. Our gene expression analysis of human melanoma cell lines and …

[PDF][PDF] A machine learning approach enables quantitative measurement of liver histology and disease monitoring in NASH

A Taylor‐Weiner, H Pokkalla, L Han, C Jia, R Huss… - …, 2021 - Wiley Online Library
Background and Aims Manual histological assessment is currently the accepted standard for
diagnosing and monitoring disease progression in NASH, but is limited by variability in …

Transcriptional regulation of nitrogen-associated metabolism and growth

A Gaudinier, J Rodriguez-Medina, L Zhang, A Olson… - Nature, 2018 - nature.com
Nitrogen is an essential macronutrient for plant growth and basic metabolic processes. The
application of nitrogen-containing fertilizer increases yield, which has been a substantial …

[HTML][HTML] Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

B Ma, Y Wang, S Ye, S Liu, E Stirling, JA Gilbert… - Microbiome, 2020 - Springer
Microbial interactions shape the structure and function of microbial communities; microbial
co-occurrence networks in specific environments have been widely developed to explore …

Pervasive protein thermal stability variation during the cell cycle

I Becher, A Andrés-Pons, N Romanov, F Stein… - Cell, 2018 - cell.com
Quantitative mass spectrometry has established proteome-wide regulation of protein
abundance and post-translational modifications in various biological processes. Here, we …

Identifying drug targets in tissues and whole blood with thermal-shift profiling

J Perrin, T Werner, N Kurzawa, A Rutkowska… - Nature …, 2020 - nature.com
Monitoring drug–target interactions with methods such as the cellular thermal-shift assay
(CETSA) is well established for simple cell systems but remains challenging in vivo. Here we …

Whole genome sequencing refines stratification and therapy of patients with clear cell renal cell carcinoma

R Culliford, SED Lawrence, C Mills, Z Tippu… - Nature …, 2024 - nature.com
Clear cell renal cell carcinoma (ccRCC) is the most common form of kidney cancer, but a
comprehensive description of its genomic landscape is lacking. We report the whole …