Applications of next generation sequencing in molecular ecology of non-model organisms

R Ekblom, J Galindo - Heredity, 2011 - nature.com
As most biologists are probably aware, technological advances in molecular biology during
the last few years have opened up possibilities to rapidly generate large-scale sequencing …

Molecular spandrels: tests of adaptation at the genetic level

RDH Barrett, HE Hoekstra - Nature Reviews Genetics, 2011 - nature.com
Although much progress has been made in identifying the genes (and, in rare cases,
mutations) that contribute to phenotypic variation, less is known about the effects that these …

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

C Holt, M Yandell - BMC bioinformatics, 2011 - Springer
Background Second-generation sequencing technologies are precipitating major shifts with
regards to what kinds of genomes are being sequenced and how they are annotated. While …

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

M Joron, L Frezal, RT Jones, NL Chamberlain, SF Lee… - Nature, 2011 - nature.com
Supergenes are tight clusters of loci that facilitate the co-segregation of adaptive variation,
providing integrated control of complex adaptive phenotypes. Polymorphic supergenes, in …

Adaptation genomics: the next generation

J Stapley, J Reger, PGD Feulner, C Smadja… - Trends in ecology & …, 2010 - cell.com
Understanding the genetics of how organisms adapt to changing environments is a
fundamental topic in modern evolutionary ecology. The field is currently progressing rapidly …

The gene cortex controls mimicry and crypsis in butterflies and moths

NJ Nadeau, C Pardo-Diaz, A Whibley, MA Supple… - Nature, 2016 - nature.com
The wing patterns of butterflies and moths (Lepidoptera) are diverse and striking examples
of evolutionary diversification by natural selection,. Lepidopteran wing colour patterns are a …

Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing

NJ Nadeau, A Whibley, RT Jones… - … of the Royal …, 2012 - royalsocietypublishing.org
Heliconius butterflies represent a recent radiation of species, in which wing pattern
divergence has been implicated in speciation. Several loci that control wing pattern …

A long noncoding RNA at the cortex locus controls adaptive coloration in butterflies

L Livraghi, JJ Hanly, E Evans, CJ Wright… - Proceedings of the …, 2024 - pnas.org
Evolutionary variation in the wing pigmentation of butterflies and moths offers striking
examples of adaptation by crypsis and mimicry. The cortex locus has been independently …

Supergenes and their role in evolution

MJ Thompson, CD Jiggins - Heredity, 2014 - nature.com
Adaptation is commonly a multidimensional problem, with changes in multiple traits required
to match a complex environment. This is epitomized by balanced polymorphisms in which …

The diversification of Heliconius butterflies: what have we learned in 150 years?

RM Merrill, KK Dasmahapatra, JW Davey… - Journal of …, 2015 - academic.oup.com
Research into Heliconius butterflies has made a significant contribution to evolutionary
biology. Here, we review our understanding of the diversification of these butterflies …