Superlinear speedup in HPC systems: Why and when?

S Ristov, R Prodan, M Gusev… - … federated conference on …, 2016 - ieeexplore.ieee.org
The speedup is usually limited by two main laws in high-performance computing, that is, the
Amdahl's and Gustafson's laws. However, the speedup sometimes can reach far beyond the …

AIKYATAN: mapping distal regulatory elements using convolutional learning on GPU

CH Fang, N Theera-Ampornpunt, MA Roth, A Grama… - BMC …, 2019 - Springer
Background The data deluge can leverage sophisticated ML techniques for functionally
annotating the regulatory non-coding genome. The challenge lies in selecting the …

Bioinformatics and Genomic Data Mining

JC Ramírez - Bioinformatics and Human Genomics Research, 2021 - taylorfrancis.com
The increasingly data-driven nature of bioinformatics makes the most promising research
efforts in this field heavily dependent on the application of algorithms and techniques …

Prediction of enhancer rna activity levels from chip-seq-derived histone modification combinatorial codes

N Theera-Ampornpunt, S Chaterji - 2017 IEEE International …, 2017 - ieeexplore.ieee.org
Motivation: Transcription-regulatory elements (TREs) are critical modulators of gene
transcription, with promoters and enhancers being major hubs for gene regulation. Of these …