Insertions and deletions: Computational methods, evolutionary dynamics, and biological applications
Insertions and deletions constitute the second most important source of natural genomic
variation. Insertions and deletions make up to 25% of genomic variants in humans and are …
variation. Insertions and deletions make up to 25% of genomic variants in humans and are …
Recent trends in molecular phylogenetic analysis: where to next?
The acquisition of large multilocus sequence data is providing researchers with an
unprecedented amount of information to resolve difficult phylogenetic problems. With these …
unprecedented amount of information to resolve difficult phylogenetic problems. With these …
Proposal for a subdivision of the family Psathyrellaceae based on a taxon-rich phylogenetic analysis with iterative multigene guide tree
D Wächter, A Melzer - Mycological Progress, 2020 - Springer
The family Psathyrellaceae was analysed using phylogenetic and morphological characters.
A total of 18,133 sequences (ITS, 5.8 S, LSU, ef-1α, β-tubulin), with 45 newly generated …
A total of 18,133 sequences (ITS, 5.8 S, LSU, ef-1α, β-tubulin), with 45 newly generated …
A phylogenetic analysis of the grape genus (Vitis L.) reveals broad reticulation and concurrent diversification during neogene and quaternary climate change
Y Wan, HR Schwaninger, AM Baldo, JA Labate… - BMC evolutionary …, 2013 - Springer
Background Grapes are one of the most economically important fruit crops. There are about
60 species in the genus Vitis. The phylogenetic relationships among these species are of …
60 species in the genus Vitis. The phylogenetic relationships among these species are of …
Re-mind the gap! Insertion–deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi
Rapidly evolving, indel-rich phylogenetic markers play a pivotal role in our understanding of
the relationships at multiple levels of the tree of life. There is extensive evidence that indels …
the relationships at multiple levels of the tree of life. There is extensive evidence that indels …
Evidence of hidden biodiversity, ongoing speciation and diverse patterns of genetic structure in giant Antarctic amphipods
Recent molecular research on Antarctic benthic organisms has challenged traditional
taxonomic classifications, suggesting that our current perceptions of Antarctic biodiversity …
taxonomic classifications, suggesting that our current perceptions of Antarctic biodiversity …
A phylogeny of the genus Amaranthus (Amaranthaceae) based on several low-copy nuclear loci and chloroplast regions
The genus Amaranthus (pigweeds) is a group of∼ 74 monoecious or dioecious annual
species native to every continent but Antarctica, frequently associated with natural and …
species native to every continent but Antarctica, frequently associated with natural and …
Indel-K2P: a modified Kimura 2 Parameters (K2P) model to incorporate insertion and deletion (Indel) information in phylogenetic analysis
Evolutionary models are widely used to estimate the evolutionary relationship between the
various biological taxa. Majority of the existing evolutionary models ignore insertion and …
various biological taxa. Majority of the existing evolutionary models ignore insertion and …
The Muscoidea (Diptera: Calyptratae) are paraphyletic: evidence from four mitochondrial and four nuclear genes
Approximately 5% of the known species-level diversity of Diptera belongs to the Muscoidea
with its approximately 7000 described species. Despite including some of the most …
with its approximately 7000 described species. Despite including some of the most …
Molecular Phylogeny of the Lactuca Alliance (Cichorieae Subtribe Lactucinae, Asteraceae) with Focus on Their Chinese Centre of Diversity Detects Potential Events …
ZH Wang, H Peng, N Kilian - PLoS One, 2013 - journals.plos.org
The first comprehensive molecular phylogenetic reconstruction of the Cichorieae subtribe
Lactucinae is provided. Sequences for two datasets, one of the nuclear rDNA ITS region, the …
Lactucinae is provided. Sequences for two datasets, one of the nuclear rDNA ITS region, the …