Chemoinformatics as a theoretical chemistry discipline

A Varnek, II Baskin - Molecular Informatics, 2011 - Wiley Online Library
Here, chemoinformatics is considered as a theoretical chemistry discipline complementary
to quantum chemistry and force‐field molecular modeling. These three fields are compared …

In silico tools to aid risk assessment of endocrine disrupting chemicals

MN Jacobs - Toxicology, 2004 - Elsevier
In silico or computational tools could be used more effectively in endocrine disruptor risk
assessment for prescreening potential endocrine disruptors, improving experimental in vitro …

Computational approaches for the design of novel dopamine D2 and serotonin 5-HT2A receptor dual antagonist towards schizophrenia

A Rathore, V Asati, M Mishra, R Das, V Kashaw… - In Silico …, 2022 - Springer
Piperidine and piperazine derivatives exhibit a diverse range of biological applications,
including antipsychotic activity. In this study, a dataset of molecules containing piperidine …

Consensus Toxicity Factors for Polychlorinated Dibenzo-p-dioxins, Dibenzofurans, and Biphenyls Combining in Silico Models and Extensive in Vitro Screening of …

M Larsson, M van den Berg, P Brenerová… - Chemical research in …, 2015 - ACS Publications
Consensus toxicity factors (CTFs) were developed as a novel approach to establish toxicity
factors for risk assessment of dioxin-like compounds (DLCs). Eighteen polychlorinated …

QSAR study and molecular docking on indirubin inhibitors of Glycogen Synthase Kinase-3

L Crisan, L Pacureanu, A Bora, S Avram… - … European Journal of …, 2013 - Springer
The current study describes the development of in silico models based on a novel
alternative of the MTD-PLS methodology (Partial-Least-Squares variant of Minimal …

Molecular fields to assess recognition forces and property spaces

G Vistoli, A Pedretti, B Testa - Virtual ADMET assessment in …, 2006 - ebooks.iospress.nl
Since the emergence of combinatorial chemistry and chemical libraries, great attention is
being paid to the concepts of chemical diversity and chemical space. This approach is …

MTD− PLS: A PLS Variant of the Minimal Topologic Difference Method. III. Mapping Interactions between Estradiol Derivatives and the Alpha Estrogenic Receptor

L Kurunczi, E Seclaman, TI Oprea… - Journal of chemical …, 2005 - ACS Publications
A homogeneous collection of 45 estrogen agonist derivatives with relative binding affinities
measured to the estrogen receptor from Ratus norvegicus was used. The quantitative …

On the use of electronic descriptors for QSAR modelling of PCDDs, PCDFs and dioxin-like PCBs£

M Larsson, B Kumar Mishra, M Tysklind… - SAR and QSAR in …, 2013 - Taylor & Francis
The electronic properties of 29 polychlorinated dibenzo-p-dioxins and dibenzofurans and
dioxin-like polychlorinated biphenyls that have been included in the toxic equivalency factor …

MTD-PLS: A PLS-Based Variant of the MTD Method. 2. Mapping Ligand− Receptor Interactions. Enzymatic Acetic Acid Esters Hydrolysis

L Kurunczi, M Olah, TI Oprea, C Bologa… - Journal of chemical …, 2002 - ACS Publications
The PLS variant of the MTD method (TI Oprea et al., SAR QSAR Environ. Res. 2001, 12, 75−
92) was applied to a series of 25 acetylcholinesterase hydrolysis substrates. Statistically …

Comparative molecular active site analysis (CoMASA). 1. An approach to rapid evaluation of 3D QSAR

T Kotani, K Higashiura - Journal of medicinal chemistry, 2004 - ACS Publications
We have developed a rapid evaluation method, comparative molecular active site analysis
(CoMASA), for obtaining 3D QSAR. CoMASA has three major advantages:(1) the CoMASA …