MCPNet: a parallel maximum capacity-based genome-scale gene network construction framework
Motivation Gene network reconstruction from gene expression profiles is a compute-and
data-intensive problem. Numerous methods based on diverse approaches including mutual …
data-intensive problem. Numerous methods based on diverse approaches including mutual …
Inherent directionality explains the lack of feedback loops in empirical networks
We explore the hypothesis that the relative abundance of feedback loops in many empirical
complex networks is severely reduced owing to the presence of an inherent global …
complex networks is severely reduced owing to the presence of an inherent global …
Edge sign prediction based on a combination of network structural topology and sign propagation
R Naaman, K Cohen, Y Louzoun - Journal of Complex Networks, 2019 - academic.oup.com
The prediction of edge signs in social and biological networks is a major goal of graph-
based machine learning and has important implication in recommendation systems. Most …
based machine learning and has important implication in recommendation systems. Most …
Genes related to differentiation are correlated with the gene regulatory network structure
M Bodaker, E Meshorer, E Mitrani, Y Louzoun - Bioinformatics, 2014 - academic.oup.com
Motivation: Many secondary messengers, receptors and transcription factors are related to
cell differentiation. Their role in cell differentiation can be affected by their position in the …
cell differentiation. Their role in cell differentiation can be affected by their position in the …