SNP genotyping and population genomics from expressed sequences–current advances and future possibilities

P De Wit, MH Pespeni, SR Palumbi - Molecular ecology, 2015 - Wiley Online Library
With the rapid increase in production of genetic data from new sequencing technologies, a
myriad of new ways to study genomic patterns in nonmodel organisms are currently …

Applications of next-generation sequencing in fisheries research: A review

G Kumar, M Kocour - Fisheries Research, 2017 - Elsevier
The rapid advancement and decreasing costs of next-generation sequencing (NGS)
technologies have revolutionized the field of genomics and beyond. NGS has led to …

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming …

L Liu, Y Wang, P He, P Li, J Lee, DE Soltis, C Fu - BMC genomics, 2018 - Springer
Abstract Background Epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae)
have an epilithic habitat (rocky slopes) and a parapatric distribution in East Asia, which …

Practical low‐coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species

NO Therkildsen, SR Palumbi - Molecular ecology resources, 2017 - Wiley Online Library
Today most population genomic studies of nonmodel organisms either sequence a subset of
the genome deeply in each individual or sequence pools of unlabelled individuals. With a …

Authoritative subspecies diagnosis tool for European honey bees based on ancestry informative SNPs

J Momeni, M Parejo, RO Nielsen, J Langa, I Montes… - BMC genomics, 2021 - Springer
Background With numerous endemic subspecies representing four of its five evolutionary
lineages, Europe holds a large fraction of Apis mellifera genetic diversity. This diversity and …

Aquaculture omics: An update on the current status of research and data analysis

JK Sundaray, S Dixit, A Rather, KD Rasal, L Sahoo - Marine Genomics, 2022 - Elsevier
Aquaculture is the fast-growing agricultural sector and has the ability to meet the growing
demand for protein nutritional security for future population. In future aquaculture is going to …

Population genomics of marine fishes: next-generation prospects and challenges

J Hemmer-Hansen, NO Therkildsen… - The Biological …, 2014 - journals.uchicago.edu
Over the past few years, technological advances have facilitated giant leaps forward in our
ability to generate genome-wide molecular data, offering exciting opportunities for gaining …

Single nucleotide polymorphism markers with applications in conservation and exploitation of aquatic natural populations

R Wenne - Animals, 2023 - mdpi.com
Simple Summary In recent decades, societies, states and local authorities have become
increasingly aware that for effective long-term management and protection of aquatic …

Comparative Transcriptome Analysis of Two Oysters, Crassostrea gigas and Crassostrea hongkongensis Provides Insights into Adaptation to Hypo-Osmotic …

X Zhao, H Yu, L Kong, S Liu, Q Li - PLoS one, 2014 - journals.plos.org
Environmental salinity creates a key barrier to limit the distribution of most aquatic
organisms. Adaptation to osmotic fluctuation is believed to be a factor facilitating species …

Molecular Inversion Probes for targeted resequencing in non-model organisms

M Niedzicka, A Fijarczyk, K Dudek, M Stuglik… - Scientific Reports, 2016 - nature.com
Applications that require resequencing of hundreds or thousands of predefined genomic
regions in numerous samples are common in studies of non-model organisms. However few …