Hallmarks of health

C López-Otín, G Kroemer - Cell, 2021 - cell.com
Health is usually defined as the absence of pathology. Here, we endeavor to define health
as a compendium of organizational and dynamic features that maintain physiology. The …

[HTML][HTML] Emerging roles of protein palmitoylation and its modifying enzymes in cancer cell signal transduction and cancer therapy

Z Liu, M Xiao, Y Mo, H Wang, Y Han… - … journal of biological …, 2022 - ncbi.nlm.nih.gov
Protein palmitoylation is an increasingly investigated form of post-translational lipid
modification that affects protein localization, accumulation, secretion and function. Recently …

Benchmarking tools for a priori identifiability analysis

X Rey Barreiro, AF Villaverde - Bioinformatics, 2023 - academic.oup.com
Motivation The theoretical possibility of determining the state and parameters of a dynamic
model by measuring its outputs is given by its structural identifiability and its observability …

SIAN: software for structural identifiability analysis of ODE models

H Hong, A Ovchinnikov, G Pogudin, C Yap - Bioinformatics, 2019 - academic.oup.com
Biological processes are often modeled by ordinary differential equations with unknown
parameters. The unknown parameters are usually estimated from experimental data. In …

Global identifiability of differential models

H Hong, A Ovchinnikov, G Pogudin… - … on Pure and Applied …, 2020 - Wiley Online Library
Many real‐world processes and phenomena are modeled using systems of ordinary
differential equations with parameters. Given such a system, we say that a parameter is …

Genetic Analysis of ABCB4 Mutations and Variants Related to the Pathogenesis and Pathophysiology of Low Phospholipid-Associated Cholelithiasis

HH Wang, P Portincasa, M Liu, DQH Wang - Genes, 2022 - mdpi.com
Clinical studies have revealed that the ABCB4 gene encodes the phospholipid transporter
on the canalicular membrane of hepatocytes, and its mutations and variants are the genetic …

Multistationarity in structured reaction networks

A Dickenstein, MP Millan, A Shiu, X Tang - Bulletin of Mathematical …, 2019 - Springer
Many dynamical systems arising in biology and other areas exhibit multistationarity (two or
more positive steady states with the same conserved quantities). Although deciding …

The smallest bimolecular mass action reaction networks admitting Andronov–Hopf bifurcation

M Banaji, B Boros - Nonlinearity, 2023 - iopscience.iop.org
We address the question of which small, bimolecular, mass action chemical reaction
networks (CRNs) are capable of Andronov–Hopf bifurcation (from here on abbreviated …

Leveraging protein dynamics to identify functional phosphorylation sites using deep learning models

F Zhu, S Yang, F Meng, Y Zheng, X Ku… - Journal of Chemical …, 2022 - ACS Publications
Accurate prediction of post-translational modifications (PTMs) is of great significance in
understanding cellular processes, by modulating protein structure and dynamics …

Oscillations and bistability in a model of ERK regulation

N Obatake, A Shiu, X Tang, A Torres - Journal of Mathematical Biology, 2019 - Springer
This work concerns the question of how two important dynamical properties, oscillations and
bistability, emerge in an important biological signaling network. Specifically, we consider a …