MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data
Microbiome studies have become routine in biomedical, agricultural and environmental
sciences with diverse aims, including diversity profiling, functional characterization, and …
sciences with diverse aims, including diversity profiling, functional characterization, and …
Statistical normalization methods in microbiome data with application to microbiome cancer research
Y Xia - Gut Microbes, 2023 - Taylor & Francis
Mounting evidence has shown that gut microbiome is associated with various cancers,
including gastrointestinal (GI) tract and non-GI tract cancers. But microbiome data have …
including gastrointestinal (GI) tract and non-GI tract cancers. But microbiome data have …
Multivariable association discovery in population-scale meta-omics studies
It is challenging to associate features such as human health outcomes, diet, environmental
conditions, or other metadata to microbial community measurements, due in part to their …
conditions, or other metadata to microbial community measurements, due in part to their …
Multi-kingdom microbiota analyses identify bacterial–fungal interactions and biomarkers of colorectal cancer across cohorts
Despite recent progress in our understanding of the association between the gut
microbiome and colorectal cancer (CRC), multi-kingdom gut microbiome dysbiosis in CRC …
microbiome and colorectal cancer (CRC), multi-kingdom gut microbiome dysbiosis in CRC …
Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes
The association of gut microbial features with type 2 diabetes (T2D) has been inconsistent
due in part to the complexity of this disease and variation in study design. Even in cases in …
due in part to the complexity of this disease and variation in study design. Even in cases in …
Critical review of 16S rRNA gene sequencing workflow in microbiome studies: From primer selection to advanced data analysis
A Regueira‐Iglesias, C Balsa‐Castro… - Molecular Oral …, 2023 - Wiley Online Library
The multi‐batch reanalysis approach of jointly reevaluating gene/genome sequences from
different works has gained particular relevance in the literature in recent years. The large …
different works has gained particular relevance in the literature in recent years. The large …
Multikingdom and functional gut microbiota markers for autism spectrum disorder
Associations between the gut microbiome and autism spectrum disorder (ASD) have been
investigated although most studies have focused on the bacterial component of the …
investigated although most studies have focused on the bacterial component of the …
Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin
Microbiome studies of inflammatory bowel diseases (IBD) have achieved a scale for meta-
analysis of dysbioses among populations. To enable microbial community meta-analyses …
analysis of dysbioses among populations. To enable microbial community meta-analyses …
Multi-kingdom gut microbiota analyses define bacterial-fungal interplay and microbial markers of pan-cancer immunotherapy across cohorts
X Huang, M Hu, T Sun, J Li, Y Zhou, Y Yan, B Xuan… - Cell Host & Microbe, 2023 - cell.com
The effect of gut bacteria on the response to immune checkpoint inhibitors (ICIs) has been
studied, but the relationship between fungi and ICI responses is not fully understood. Herein …
studied, but the relationship between fungi and ICI responses is not fully understood. Herein …
Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes
Musculoskeletal diseases affect up to 20% of adults worldwide. The gut microbiome has
been implicated in inflammatory conditions, but large-scale metagenomic evaluations have …
been implicated in inflammatory conditions, but large-scale metagenomic evaluations have …