Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling

H Toh, K Horimoto - Bioinformatics, 2002 - academic.oup.com
Motivation: Recent advances in DNA microarray technologies have made it possible to
measure the expression levels of thousands of genes simultaneously under different …

Consensus clustering and functional interpretation of gene-expression data

S Swift, A Tucker, V Vinciotti, N Martin, C Orengo, X Liu… - Genome biology, 2004 - Springer
Microarray analysis using clustering algorithms can suffer from lack of inter-method
consistency in assigning related gene-expression profiles to clusters. Obtaining a …

Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study

J Wang, J Delabie, HC Aasheim, E Smeland… - BMC …, 2002 - Springer
Background A method to evaluate and analyze the massive data generated by series of
microarray experiments is of utmost importance to reveal the hidden patterns of gene …

Structure learning of probabilistic graphical models: a comprehensive survey

Y Zhou - arXiv preprint arXiv:1111.6925, 2011 - arxiv.org
Probabilistic graphical models combine the graph theory and probability theory to give a
multivariate statistical modeling. They provide a unified description of uncertainty using …

Bioinformatic methods for integrating whole-genome expression results into cellular networks

D Cavalieri, C De Filippo - Drug discovery today, 2005 - Elsevier
Extracting a comprehensive overview from the huge amount of information arising from
whole-genome analyses is a significant challenge. This review critically surveys the state of …

[HTML][HTML] Urban growth and shrinkage with Chinese characteristics: Evidence from Shandong Province, China

X Zhang, S Yu, X Ding, M Li, Y Miao, C Wang - Applied Geography, 2023 - Elsevier
Whilst China experiences long-term rapid urbanization, urban shrinkage, as a new normal,
has become a common phenomenon in urban development along with growth. In this study …

Gene clustering based on clusterwide mutual information

X Zhou, X Wang, ER Dougherty, D Russ… - Journal of …, 2004 - liebertpub.com
Cluster analysis of gene-wide expression data from DNA microarray hybridization studies
has proved to be a useful tool for identifying biologically relevant groupings of genes and …

Robust cluster analysis of microarray gene expression data with the number of clusters determined biologically

DR Bickel - Bioinformatics, 2003 - academic.oup.com
Motivation: The success of each method of cluster analysis depends on how well its
underlying model describes the patterns of expression. Outlier-resistant and distribution …

The computational analysis of scientific literature to define and recognize gene expression clusters

S Raychaudhuri, JT Chang, F Imam… - Nucleic Acids …, 2003 - academic.oup.com
A limitation of many gene expression analytic approaches is that they do not incorporate
comprehensive background knowledge about the genes into the analysis. We present a …

Statistical significance for hierarchical clustering in genetic association and microarray expression studies

MA Levenstien, Y Yang, J Ott - BMC bioinformatics, 2003 - Springer
Background With the increasing amount of data generated in molecular genetics
laboratories, it is often difficult to make sense of results because of the vast number of …