Advances and opportunities in image analysis of bacterial cells and communities

H Jeckel, K Drescher - FEMS Microbiology Reviews, 2021 - academic.oup.com
The cellular morphology and sub-cellular spatial structure critically influence the function of
microbial cells. Similarly, the spatial arrangement of genotypes and phenotypes in microbial …

Untangling cell tracks: Quantifying cell migration by time lapse image data analysis

CM Svensson, A Medyukhina, I Belyaev… - Cytometry Part …, 2018 - Wiley Online Library
Automated microscopy has given researchers access to great amounts of live cell imaging
data from in vitro and in vivo experiments. Much focus has been put on extracting cell tracks …

Iterative community-driven development of a SARS-CoV-2 tissue simulator

M Getz, Y Wang, G An, M Asthana, A Becker… - BioRxiv, 2021 - pmc.ncbi.nlm.nih.gov
The 2019 novel coronavirus, SARS-CoV-2, is a pathogen of critical significance to
international public health. Knowledge of the interplay between molecular-scale virus …

Mast cells acquire MHCII from dendritic cells during skin inflammation

J Dudeck, A Medyukhina, J Fröbel… - Journal of Experimental …, 2017 - rupress.org
Mast cells (MCs) and dendritic cells (DCs) are essential innate sentinels populating host-
environment interfaces. Using longitudinal intravital multiphoton microscopy of …

Coding of experimental conditions in microfluidic droplet assays using colored beads and machine learning supported image analysis

CM Svensson, O Shvydkiv, S Dietrich, L Mahler… - Small, 2019 - Wiley Online Library
To efficiently exploit the potential of several millions of droplets that can be considered as
individual bioreactors in microfluidic experiments, methods to encode different experimental …

Spatiotemporal dynamics of virus infection spreading in tissues

G Bocharov, A Meyerhans, N Bessonov, S Trofimchuk… - PLoS …, 2016 - journals.plos.org
Virus spreading in tissues is determined by virus transport, virus multiplication in host cells
and the virus-induced immune response. Cytotoxic T cells remove infected cells with a rate …

Dynamic spherical harmonics approach for shape classification of migrating cells

A Medyukhina, M Blickensdorf, Z Cseresnyés, N Ruef… - Scientific reports, 2020 - nature.com
Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can
be analyzed and classified using advanced shape descriptors, including spherical …

[HTML][HTML] Invasive aspergillosis-on-chip: A quantitative treatment study of human Aspergillus fumigatus infection

TNM Hoang, Z Cseresnyés, S Hartung, M Blickensdorf… - Biomaterials, 2022 - Elsevier
Invasive pulmonary aspergillosis is associated with a high mortality rate and poses a direct
threat to immunocompromised patients. Here, we present the invasive aspergillosis-on-chip …

Characterization of the dynamic behavior of neutrophils following influenza vaccination

DU Pizzagalli, I Latino, A Pulfer… - Frontiers in …, 2019 - frontiersin.org
Neutrophils are amongst the first cells to respond to inflammation and infection. Although
they play a key role in limiting the dissemination of pathogens, the study of their dynamic …

Impact of functional electrical stimulation on nerve-damaged muscles by quantifying fat infiltration using deep learning

K Walluks, JP Praetorius, D Arnold, MT Figge - Scientific Reports, 2024 - nature.com
Quantitative imaging in life sciences has evolved into a powerful approach combining
advanced microscopy acquisition and automated analysis of image data. The focus of the …