Illuminating the dark phosphoproteome

EJ Needham, BL Parker, T Burykin, DE James… - Science …, 2019 - science.org
Protein phosphorylation is a major regulator of protein function and biological outcomes.
This was first recognized through functional biochemical experiments, and in the past …

A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition

V Vidova, Z Spacil - Analytica chimica acta, 2017 - Elsevier
Mass spectrometry (MS) based proteomics have achieved a near-complete proteome
coverage in humans and in several other organisms, producing a wealth of information …

Modular cytokine receptor-targeting chimeras for targeted degradation of cell surface and extracellular proteins

K Pance, JA Gramespacher, JR Byrnes… - Nature …, 2023 - nature.com
Targeted degradation of cell surface and extracellular proteins via lysosomal delivery is an
important means to modulate extracellular biology. However, these approaches have …

Targeting LIF-mediated paracrine interaction for pancreatic cancer therapy and monitoring

Y Shi, W Gao, NK Lytle, P Huang, X Yuan, AM Dann… - Nature, 2019 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) has a dismal prognosis largely owing to
inefficient diagnosis and tenacious drug resistance. Activation of pancreatic stellate cells …

Analyzing and interpreting genome data at the network level with ConsensusPathDB

R Herwig, C Hardt, M Lienhard, A Kamburov - Nature protocols, 2016 - nature.com
ConsensusPathDB consists of a comprehensive collection of human (as well as mouse and
yeast) molecular interaction data integrated from 32 different public repositories and a web …

Non-histone protein methylation as a regulator of cellular signalling and function

KK Biggar, SSC Li - Nature reviews Molecular cell biology, 2015 - nature.com
Abstract Methylation of Lys and Arg residues on non-histone proteins has emerged as a
prevalent post-translational modification and as an important regulator of cellular signal …

Status of large-scale analysis of post-translational modifications by mass spectrometry

JV Olsen, M Mann - Molecular & cellular proteomics, 2013 - ASBMB
Cellular function can be controlled through the gene expression program, but often protein
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …

Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution

A Martinez-Val, DB Bekker-Jensen… - Nature …, 2021 - nature.com
Dynamic change in subcellular localization of signaling proteins is a general concept that
eukaryotic cells evolved for eliciting a coordinated response to stimuli. Mass spectrometry …

Advances in targeted proteomics and applications to biomedical research

T Shi, E Song, S Nie, KD Rodland, T Liu, WJ Qian… - …, 2016 - Wiley Online Library
Targeted proteomics technique has emerged as a powerful protein quantification tool in
systems biology, biomedical research, and increasing for clinical applications. The most …

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

BC Collins, LC Gillet, G Rosenberger, HL Röst… - Nature …, 2013 - nature.com
Protein complexes and protein interaction networks are essential mediators of most
biological functions. Complexes supporting transient functions such as signal transduction …