Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

Designing salt stress‐resilient crops: Current progress and future challenges

X Liang, J Li, Y Yang, C Jiang… - Journal of Integrative Plant …, 2024 - Wiley Online Library
Excess soil salinity affects large regions of land and is a major hindrance to crop production
worldwide. Therefore, understanding the molecular mechanisms of plant salt tolerance has …

The ZmWAKL–ZmWIK–ZmBLK1–ZmRBOH4 module provides quantitative resistance to gray leaf spot in maize

T Zhong, M Zhu, Q Zhang, Y Zhang, S Deng, C Guo… - Nature Genetics, 2024 - nature.com
Gray leaf spot (GLS), caused by the fungal pathogens Cercospora zeae-maydis and
Cercospora zeina, is a major foliar disease of maize worldwide (Zea mays L.). Here we …

GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals

X Liu, D Tian, C Li, B Tang, Z Wang… - Nucleic Acids …, 2023 - academic.oup.com
Abstract GWAS Atlas (https://ngdc. cncb. ac. cn/gwas/) is a manually curated resource of
genome-wide genotype-to-phenotype associations for a wide range of species. Here, we …

Allelic variation of TaWD40-4B.1 contributes to drought tolerance by modulating catalase activity in wheat

G Tian, S Wang, J Wu, Y Wang, X Wang, S Liu… - Nature …, 2023 - nature.com
Drought drastically restricts wheat production, so to dissect allelic variations of drought
tolerant genes without imposing trade-offs between tolerance and yield is essential to cope …

De novo domestication in the Solanaceae: advances and challenges

K Gasparini, YG Figueiredo, WL Araújo… - Current Opinion in …, 2024 - Elsevier
Highlights•Efficient genome editing (GE) accelerates the domestication of crop wild
relatives.•New crops can be rapidly created to withstand drought, flooding, and soil …

Winners take all: competition for carbon resource determines grain fate

S Shen, S Ma, L Wu, SL Zhou, YL Ruan - Trends in Plant Science, 2023 - cell.com
As an evolutionary strategy, plants overproduce ovaries as a safety net for survival, with
those losing in the competition for resources being aborted. Grain abortion is, however …

The power and perils of de novo domestication using genome editing

ME Bartlett, BT Moyers, J Man… - Annual Review of …, 2023 - annualreviews.org
There is intense interest in using genome editing technologies to domesticate wild plants, or
accelerate the improvement of weakly domesticated crops, in de novo domestication. Here …

Convergence and divergence of diploid and tetraploid cotton genomes

J Li, Z Liu, C You, Z Qi, J You, CE Grover, Y Long… - Nature Genetics, 2024 - nature.com
Polyploidy is an important driving force in speciation and evolution; however, the genomic
basis for parallel selection of a particular trait between polyploids and ancestral diploids …