[PDF][PDF] Biological functions of autophagy genes: a disease perspective

B Levine, G Kroemer - Cell, 2019 - cell.com
The lysosomal degradation pathway of autophagy plays a fundamental role in cellular,
tissue, and organismal homeostasis and is mediated by evolutionarily conserved autophagy …

[PDF][PDF] Global genetic networks and the genotype-to-phenotype relationship

M Costanzo, E Kuzmin, J van Leeuwen, B Mair… - Cell, 2019 - cell.com
Genetic interactions identify combinations of genetic variants that impinge on phenotype.
With whole-genome sequence information available for thousands of individuals within a …

[PDF][PDF] Mapping the genetic landscape of human cells

MA Horlbeck, A Xu, M Wang, NK Bennett, CY Park… - Cell, 2018 - cell.com
Seminal yeast studies have established the value of comprehensively mapping genetic
interactions (GIs) for inferring gene function. Efforts in human cells using focused gene sets …

Environmental robustness of the global yeast genetic interaction network

M Costanzo, J Hou, V Messier, J Nelson, M Rahman… - Science, 2021 - science.org
INTRODUCTION Genetic interactions are identified when variants in different genes
combine to generate an unusual phenotype compared with the expected combined effect of …

Interpretation of cancer mutations using a multiscale map of protein systems

F Zheng, MR Kelly, DJ Ramms, ML Heintschel, K Tao… - Science, 2021 - science.org
INTRODUCTION Tumor genome sequencing has revealed that, beyond a few commonly
mutated genes, most mutations that affect cancer genomes are rare. To interpret these rare …

[PDF][PDF] Mapping the multiscale structure of biological systems

LV Schaffer, T Ideker - Cell systems, 2021 - cell.com
Biological systems are by nature multiscale, consisting of subsystems that factor into
progressively smaller units in a deeply hierarchical structure. At any level of the hierarchy …

Autophagic clearance of proteasomes in yeast requires the conserved sorting nexin Snx4

AA Nemec, LA Howell, AK Peterson, MA Murray… - Journal of Biological …, 2017 - ASBMB
Turnover of the 26S proteasome by autophagy is an evolutionarily conserved process that
governs cellular proteolytic capacity and eliminates inactive particles. In most organisms …

Autophagy in the context of the cellular membrane-trafficking system: the enigma of Atg9 vesicles

T Noda - Biochemical Society Transactions, 2017 - portlandpress.com
Macroautophagy is an intracellular degradation system that involves the de novo formation
of membrane structures called autophagosomes, although the detailed process by which …

Lipid trafficking by yeast Snx4 family SNX-BAR proteins promotes autophagy and vacuole membrane fusion

M Ma, S Kumar, L Purushothaman… - Molecular biology of …, 2018 - Am Soc Cell Biol
Cargo-selective and nonselective autophagy pathways employ a common core autophagy
machinery that directs biogenesis of an autophagosome that eventually fuses with the …

The LRRK2 signalling system

A Price, C Manzoni, MR Cookson, PA Lewis - Cell and tissue research, 2018 - Springer
The LRRK2 gene is a major contributor to genetic risk for Parkinson's disease and
understanding the biology of the leucine-rich repeat kinase 2 (LRRK2, the protein product of …