Genome sequencing data analysis for rare disease gene discovery

UKI Umlai, DK Bangarusamy, X Estivill… - Briefings in …, 2022 - academic.oup.com
Rare diseases occur in a smaller proportion of the general population, which is variedly
defined as less than 200 000 individuals (US) or in less than 1 in 2000 individuals (Europe) …

VarFish: comprehensive DNA variant analysis for diagnostics and research

M Holtgrewe, O Stolpe, M Nieminen… - Nucleic acids …, 2020 - academic.oup.com
VarFish is a user-friendly web application for the quality control, filtering, prioritization,
analysis, and user-based annotation of DNA variant data with a focus on rare disease …

Variant Impact Predictor database (VIPdb), version 2: trends from three decades of genetic variant impact predictors

YJ Lin, AS Menon, Z Hu, SE Brenner - Human Genomics, 2024 - Springer
Background Variant interpretation is essential for identifying patients' disease-causing
genetic variants amongst the millions detected in their genomes. Hundreds of Variant Impact …

[图书][B] Next-generation sequencing data analysis

X Wang - 2023 - taylorfrancis.com
Next-generation DNA and RNA sequencing has revolutionized biology and medicine. With
sequencing costs continuously dropping and our ability to generate large datasets rising …

Genetic modifiers at the crossroads of personalised medicine for haemoglobinopathies

C Stephanou, S Tamana, A Minaidou… - Journal of Clinical …, 2019 - mdpi.com
Haemoglobinopathies are common monogenic disorders with diverse clinical
manifestations, partly attributed to the influence of modifier genes. Recent years have seen …

Splicing impact of deep exonic missense variants in CAPN3 explored systematically by minigene functional assay

E Dionnet, A Defour, N Da Silva, A Salvi… - Human …, 2020 - Wiley Online Library
Improving the accuracy of variant interpretation during diagnostic sequencing is a major
goal for genomic medicine. To explore an often‐overlooked splicing effect of missense …

VPOT: a customizable variant prioritization ordering tool for annotated variants

E Ip, G Chapman, D Winlaw… - Genomics …, 2019 - academic.oup.com
Next-generation sequencing (NGS) technologies generate thousands to millions of genetic
variants per sample. Identification of potential disease-causal variants is labor intensive as it …

[HTML][HTML] Classifying Alzheimer's disease and normal subjects using machine learning techniques and genetic-environmental features

YH Huang, YC Chen, WM Ho, RG Lee… - Journal of the Formosan …, 2024 - Elsevier
Background Alzheimer's disease (AD) is complicated by multiple environmental and
polygenetic factors. The accuracy of artificial neural networks (ANNs) incorporating the …

Molecular yield of targeted sequencing for Glanzmann thrombasthenia patients

T Owaidah, M Saleh, B Baz, B Abdulaziz… - NPJ Genomic …, 2019 - nature.com
Glanzmann thrombasthenia (GT) is a rare autosomal recessive bleeding disorder. Around
490 mutations in ITGA2B and ITGB3 genes were reported. We aimed to use targeted next …

[HTML][HTML] The importance of automation in genetic diagnosis: Lessons from analyzing an inherited retinal degeneration cohort with the Mendelian Analysis Toolkit …

E Zampaglione, M Maher, EM Place, NE Wagner… - Genetics in …, 2022 - Elsevier
Abstract Purpose In Mendelian disease diagnosis, variant analysis is a repetitive, error-
prone, and time consuming process. To address this, we have developed the Mendelian …