Systems metabolic engineering strategies: integrating systems and synthetic biology with metabolic engineering

KR Choi, WD Jang, D Yang, JS Cho, D Park… - Trends in …, 2019 - cell.com
Metabolic engineering allows development of microbial strains efficiently producing
chemicals and materials, but it requires much time, effort, and cost to make the strains …

Bricks and blueprints: methods and standards for DNA assembly

A Casini, M Storch, GS Baldwin, T Ellis - Nature Reviews Molecular Cell …, 2015 - nature.com
DNA assembly is a key part of constructing gene expression systems and even whole
chromosomes. In the past decade, a plethora of powerful new DNA assembly methods …

A highly characterized yeast toolkit for modular, multipart assembly

ME Lee, WC DeLoache, B Cervantes… - ACS synthetic …, 2015 - ACS Publications
Saccharomyces cerevisiae is an increasingly attractive host for synthetic biology because of
its long history in industrial fermentations. However, until recently, most synthetic biology …

CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae

R Mans, HM van Rossum, M Wijsman… - FEMS yeast …, 2015 - academic.oup.com
A variety of techniques for strain engineering in Saccharomyces cerevisiae have recently
been developed. However, especially when multiple genetic manipulations are required …

Structural basis for the docking of mTORC1 on the lysosomal surface

KB Rogala, X Gu, JF Kedir, M Abu-Remaileh… - Science, 2019 - science.org
The mTORC1 (mechanistic target of rapamycin complex 1) protein kinase regulates growth
in response to nutrients and growth factors. Nutrients promote its translocation to the …

Synthetic and systems biology for microbial production of commodity chemicals

V Chubukov, A Mukhopadhyay, CJ Petzold… - NPJ systems biology …, 2016 - nature.com
The combination of synthetic and systems biology is a powerful framework to study
fundamental questions in biology and produce chemicals of immediate practical application …

Multistable and dynamic CRISPRi-based synthetic circuits

J Santos-Moreno, E Tasiudi, J Stelling… - Nature …, 2020 - nature.com
Gene expression control based on CRISPRi (clustered regularly interspaced short
palindromic repeats interference) has emerged as a powerful tool for creating synthetic gene …

Recent Advances in Silent Gene Cluster Activation in Streptomyces

Z Liu, Y Zhao, C Huang, Y Luo - Frontiers in Bioengineering and …, 2021 - frontiersin.org
Natural products (NPs) are critical sources of drug molecules for decades. About two-thirds
of natural antibiotics are produced by Streptomyces. Streptomyces have a large number of …

AQUA cloning: a versatile and simple enzyme-free cloning approach

HM Beyer, P Gonschorek, SL Samodelov, M Meier… - PloS one, 2015 - journals.plos.org
Assembly cloning is increasingly replacing conventional restriction enzyme and DNA-ligase-
dependent cloning methods for reasons of efficiency and performance. Here, we describe …

Analysis of modular bioengineered antimicrobial lanthipeptides at nanoliter scale

S Schmitt, M Montalbán-López, D Peterhoff… - Nature chemical …, 2019 - nature.com
The rise of antibiotic resistance demands the acceleration of molecular diversification
strategies to inspire new chemical entities for antibiotic medicines. We report here on the …