Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

KM Kennedy, MC de Goffau, ME Perez-Muñoz… - Nature, 2023 - nature.com
Whether the human fetus and the prenatal intrauterine environment (amniotic fluid and
placenta) are stably colonized by microbial communities in a healthy pregnancy remains a …

[HTML][HTML] Application of next generation sequencing in laboratory medicine

Y Zhong, F Xu, J Wu, J Schubert… - Annals of laboratory …, 2021 - synapse.koreamed.org
The rapid development of next-generation sequencing (NGS) technology, including
advances in sequencing chemistry, sequencing technologies, bioinformatics, and data …

[HTML][HTML] Tumor-resident intracellular microbiota promotes metastatic colonization in breast cancer

A Fu, B Yao, T Dong, Y Chen, J Yao, Y Liu, H Li, H Bai… - Cell, 2022 - cell.com
Tumor-resident intracellular microbiota is an emerging tumor component that has been
documented for a variety of cancer types with unclear biological functions. Here, we …

Tumor microbiome links cellular programs and immunity in pancreatic cancer

B Ghaddar, A Biswas, C Harris, MB Omary, DR Carpizo… - Cancer Cell, 2022 - cell.com
Microorganisms are detected in multiple cancer types, including in putatively sterile organs,
but the contexts in which they influence oncogenesis or anti-tumor responses in humans …

[HTML][HTML] Microbial exposure during early human development primes fetal immune cells

A Mishra, GC Lai, LJ Yao, TT Aung, N Shental… - Cell, 2021 - cell.com
The human fetal immune system begins to develop early during gestation; however, factors
responsible for fetal immune-priming remain elusive. We explored potential exposure to …

IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences

A Murali, A Bhargava, ES Wright - Microbiome, 2018 - Springer
Background Microbiome studies often involve sequencing a marker gene to identify the
microorganisms in samples of interest. Sequence classification is a critical component of this …

Human placenta has no microbiome but can contain potential pathogens

MC De Goffau, S Lager, U Sovio, F Gaccioli, E Cook… - Nature, 2019 - nature.com
We sought to determine whether pre-eclampsia, spontaneous preterm birth or the delivery of
infants who are small for gestational age were associated with the presence of bacterial …

Maternal microbiota, early life colonization and breast milk drive immune development in the newborn

C Kalbermatter, N Fernandez Trigo… - Frontiers in …, 2021 - frontiersin.org
The innate immune system is the oldest protection strategy that is conserved across all
organisms. Although having an unspecific action, it is the first and fastest defense …

mNGS in clinical microbiology laboratories: on the road to maturity

D Han, Z Li, R Li, P Tan, R Zhang… - Critical reviews in …, 2019 - Taylor & Francis
Metagenomic next-generation sequencing (mNGS) is increasingly being applied in clinical
laboratories for unbiased culture-independent diagnosis. Whether it can be a next routine …

Not all animals need a microbiome

TJ Hammer, JG Sanders, N Fierer - FEMS microbiology letters, 2019 - academic.oup.com
It is often taken for granted that all animals host and depend upon a microbiome, yet this has
only been shown for a small proportion of species. We propose that animals span a …