V Pierce, M Kang, M Aburi, S Weerasinghe… - Cell biochemistry and …, 2008 - Springer
The effect of cosolvents on biomolecular equilibria has traditionally been rationalized using simple binding models. More recently, a renewed interest in the use of Kirkwood–Buff (KB) …
Y Luo, B Roux - The journal of physical chemistry letters, 2010 - ACS Publications
Accurate force fields are critical for meaningful simulation studies of highly concentrated electrolytes. The ion models that are widely used in biomolecular simulations do not …
BAC Horta, PT Merz, PFJ Fuchs, J Dolenc… - Journal of chemical …, 2016 - ACS Publications
This article reports on the calibration and validation of a new GROMOS-compatible parameter set 2016H66 for small organic molecules in the condensed phase. The …
We discuss two methods for calculating Kirkwood–Buff integrals (KBIs) of aqueous cosolvent solutions from molecular simulations. The first method is based on computing running …
MB Gee, NR Cox, Y Jiao, N Bentenitis… - Journal of chemical …, 2011 - ACS Publications
A classical nonpolarizable force field is presented for the simulation of aqueous alkali halide solutions (MX), where M= Li+, Na+, K+, Rb+, and Cs+ and X= F–, Cl–, Br–, and I–, and their …
Abstract The Kirkwood-Buff (KB) theory provides a rigorous framework to predict thermodynamic properties of isotropic liquids from the microscopic structure. Several …
J Chen, CL Brooks Iii - Physical Chemistry Chemical Physics, 2008 - pubs.rsc.org
Accurate description of the solvent environment is critical in computer simulations of protein structure and dynamics. An implicit treatment of solvent aims to capture the mean influence …
The accuracy of empirical force fields is critical for meaningful molecular dynamics simulations of concentrated ionic solutions. Current models are typically developed on the …
J Chen, CL Brooks, HA Scheraga - The Journal of Physical …, 2008 - ACS Publications
Carboxylic acid dimers are useful model systems for understanding the interplay of hydrogen bonding, hydrophobic effects, and entropy in self-association and assembly …