Population genetics is transitioning into a data-driven discipline thanks to the availability of
large-scale genomic data and the need to study increasingly complex evolutionary …

About fifty times more data has been created than there are stars in the observable universe.
Current trends in data creation and consumption mean that the devices and storage media …

Metagenomics is a rapidly expanding field that uses next-generation sequencing technology
to analyze the genetic makeup of environmental samples. However, accurately identifying …

Motivation High-quality sequence assembly is the ultimate representation of complete
genetic information of an individual. Several ongoing pangenome projects are producing …

Genomic sequencing has become increasingly prevalent, generating massive amounts of
data and facing a significant challenge in long-term storage and transmission. A solution that …

The increasing availability of expressive quantities of human viral sequenced samples,
namely from clinical and forensic contexts, has led to the emergence of many optimized …

Background Viruses are among the shortest yet highly abundant species that harbor
minimal instructions to infect cells, adapt, multiply, and exist. However, with the current …

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome data are essential
for epidemiology, vaccine development, and tracking emerging variants. Millions of SARS …

In this paper, we propose a Learning-based gEnome Codec (LEC), which is designed for
high efficiency and enhanced flexibility. The LEC integrates several advanced technologies …

Generative probabilistic modeling of biological sequences has widespread existing and
potential use across biology and biomedicine, particularly given advances in high …