Structure-based virtual screening for ligands of G protein–coupled receptors: what can molecular docking do for you?

F Ballante, AJ Kooistra, S Kampen, C de Graaf… - Pharmacological …, 2021 - ASPET
G protein–coupled receptors (GPCRs) constitute the largest family of membrane proteins in
the human genome and are important therapeutic targets. During the last decade, the …

Exploring G protein-coupled receptors (GPCRs) ligand space via cheminformatics approaches: impact on rational drug design

S Basith, M Cui, SJY Macalino, J Park… - Frontiers in …, 2018 - frontiersin.org
The primary goal of rational drug discovery is the identification of selective ligands which act
on single or multiple drug targets to achieve the desired clinical outcome through the …

Fragment-to-lead medicinal chemistry publications in 2021

L Walsh, DA Erlanson, IJP de Esch… - Journal of medicinal …, 2023 - ACS Publications
This Perspective is the seventh in an annual series that summarizes successful Fragment-to-
Lead (F2L) case studies published in a given year. A tabulated summary of relevant articles …

Brief report: Gender identity differences in autistic adults: Associations with perceptual and socio-cognitive profiles

RJ Walsh, L Krabbendam, J Dewinter… - Journal of autism and …, 2018 - Springer
Prior research has shown an elevation in autism traits and diagnoses in individuals seen for
gender related consultation and in participants self-identifying as transgender. To …

Adenosine A2A receptor antagonists: from caffeine to selective non‐xanthines

KA Jacobson, ZG Gao, P Matricon… - British journal of …, 2022 - Wiley Online Library
A long evolution of knowledge of the psychostimulant caffeine led in the 1960s to another
purine natural product, adenosine and its A2A receptor. Adenosine is a short‐lived …

Accurate prediction of GPCR ligand binding affinity with free energy perturbation

F Deflorian, L Perez-Benito, EB Lenselink… - Journal of Chemical …, 2020 - ACS Publications
The computational prediction of relative binding free energies is a crucial goal for drug
discovery, and G protein-coupled receptors (GPCRs) are arguably the most important drug …

Discovery and validation of the binding poses of allosteric fragment hits to protein tyrosine phosphatase 1b: From molecular dynamics simulations to X-ray …

JB Greisman, L Willmore, CY Yeh… - Journal of Chemical …, 2023 - ACS Publications
Fragment-based drug discovery has led to six approved drugs, but the small sizes of the
chemical fragments used in such methods typically result in only weak interactions between …

Evaluating the use of absolute binding free energy in the fragment optimisation process

I Alibay, A Magarkar, D Seeliger… - Communications Chemistry, 2022 - nature.com
Key to the fragment optimisation process within drug design is the need to accurately
capture the changes in affinity that are associated with a given set of chemical modifications …

Identification of ligand-specific G-protein coupled receptor states and prediction of downstream efficacy via data-driven modeling

O Fleetwood, L Delemotte - Biophysical Journal, 2021 - cell.com
G protein-coupled receptors (GPCRs) shift between inactive non-signalling states and active
signalling states, to which intracellular binding partners can bind. Extracellular binding of …

[HTML][HTML] The rise of molecular simulations in fragment-based drug design (FBDD): an overview

M Bissaro, M Sturlese, S Moro - Drug Discovery Today, 2020 - Elsevier
Highlights•Fragment-based drug design (FBDD) is revolutionizing the identification and
optimization of new drug candidates.•Molecular simulations-based approaches are …