The microbiota-gut-brain axis

JF Cryan, KJ O'Riordan, CSM Cowan… - Physiological …, 2019 - journals.physiology.org
I. INTRODUCTION 1877 II. STUDYING THE... 1881 III. MICROBIOTA-GUT-BRAIN AXIS...
1907 IV. PATHWAYS OF COMMUNICATION 1911 V. MICROBIOTA AND SYNAPTIC... 1929 …

The role of Enterobacteriaceae in gut microbiota dysbiosis in inflammatory bowel diseases

V Baldelli, F Scaldaferri, L Putignani, F Del Chierico - Microorganisms, 2021 - mdpi.com
Inflammatory bowel diseases (IBDs) are a group of chronic gastrointestinal inflammatory
diseases with unknown etiology. There is a combination of well documented factors in their …

Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota

F Durazzi, C Sala, G Castellani, G Manfreda… - Scientific reports, 2021 - nature.com
In this paper we compared taxonomic results obtained by metataxonomics (16S rRNA gene
sequencing) and metagenomics (whole shotgun metagenomic sequencing) to investigate …

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

L Xu, Z Dong, D Chiniquy, G Pierroz, S Deng… - Nature …, 2021 - nature.com
Recent studies have demonstrated that drought leads to dramatic, highly conserved shifts in
the root microbiome. At present, the molecular mechanisms underlying these responses …

A predictive index for health status using species-level gut microbiome profiling

VK Gupta, M Kim, U Bakshi, KY Cunningham… - Nature …, 2020 - nature.com
Providing insight into one's health status from a gut microbiome sample is an important
clinical goal in current human microbiome research. Herein, we introduce the Gut …

Interpretations of environmental microbial community studies are biased by the selected 16S rRNA (gene) amplicon sequencing pipeline

D Straub, N Blackwell, A Langarica-Fuentes… - Frontiers in …, 2020 - frontiersin.org
One of the major methods to identify microbial community composition, to unravel microbial
population dynamics, and to explore microbial diversity in environmental samples is high …

Exploring the human microbiome: the potential future role of next-generation sequencing in disease diagnosis and treatment

MA Malla, A Dubey, A Kumar, S Yadav… - Frontiers in …, 2019 - frontiersin.org
The interaction between the human microbiome and immune system has an effect on
several human metabolic functions and impacts our well-being. Additionally, the interaction …

Evaluating the information content of shallow shotgun metagenomics

B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu… - Msystems, 2018 - Am Soc Microbiol
Although microbial communities are associated with human, environmental, plant, and
animal health, there exists no cost-effective method for precisely characterizing species and …

How uterine microbiota might be responsible for a receptive, fertile endometrium

M Benner, G Ferwerda, I Joosten… - Human reproduction …, 2018 - academic.oup.com
BACKGROUND Fertility depends on a receptive state of the endometrium, influenced by
hormonal and anatomical adaptations, as well as the immune system. Local and systemic …

Storm impacts on phytoplankton community dynamics in lakes

JD Stockwell, JP Doubek, R Adrian… - Global change …, 2020 - Wiley Online Library
In many regions across the globe, extreme weather events such as storms have increased in
frequency, intensity, and duration due to climate change. Ecological theory predicts that …