2022 updates to the Rat Genome Database: a findable, accessible, interoperable, and reusable (FAIR) resource

M Vedi, JR Smith, G Thomas Hayman, M Tutaj… - Genetics, 2023 - academic.oup.com
Abstract The Rat Genome Database (RGD, https://rgd. mcw. edu) has evolved from simply a
resource for rat genetic markers, maps, and genes, by adding multiple genomic data types …

The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes

GV Gkoutos, PN Schofield, R Hoehndorf - International review of …, 2012 - Elsevier
In recent years, considerable advances have been made toward our understanding of the
genetic architecture of behavior and the physical, mental, and environmental influences that …

The Rat Genome Database 2013—data, tools and users

SJF Laulederkind, GT Hayman, SJ Wang… - Briefings in …, 2013 - academic.oup.com
Abstract The Rat Genome Database (RGD) was started> 10 years ago to provide a core
genomic resource for rat researchers. Currently, RGD combines genetic, genomic, pathway …

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database

AP Davis, TC Wiegers, CG Murphy, CJ Mattingly - Database, 2011 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD) is a public resource that
promotes understanding about the effects of environmental chemicals on human health …

The Disease Portals, disease–gene annotation and the RGD disease ontology at the Rat Genome Database

GT Hayman, SJF Laulederkind, JR Smith, SJ Wang… - Database, 2016 - academic.oup.com
Abstract The Rat Genome Database (RGD; http://rgd. mcw. edu/) provides critical datasets
and software tools to a diverse community of rat and non-rat researchers worldwide. To meet …

[HTML][HTML] PhenoMiner: quantitative phenotype curation at the rat genome database

SJF Laulederkind, W Liu, JR Smith, GT Hayman… - Database, 2013 - academic.oup.com
Abstract The Rat Genome Database (RGD) is the premier repository of rat genomic and
genetic data and currently houses> 40 000 rat gene records as well as human and mouse …

Morphologic diversity of the minor salivary glands of the rat: fertile ground for studies in gene function and proteomics

RS Redman - Biotechnic & Histochemistry, 2012 - Taylor & Francis
In this article the locations and histologic and ultrastructural features of all of the minor
salivary glands of the rat are presented; similarities and differences among them are …

[HTML][HTML] Analysis of disease-associated objects at the Rat Genome Database

SJ Wang, SJF Laulederkind, GT Hayman, JR Smith… - Database, 2013 - academic.oup.com
Abstract The Rat Genome Database (RGD) is the premier resource for genetic, genomic and
phenotype data for the laboratory rat, Rattus norvegicus. In addition to organizing biological …

Genomic homeostasis is dysregulated in favour of apoptosis in the colonic epithelium of the azoxymethane treated rat

CA Kerr, BM Hines, JM Shaw, R Dunne, LM Bragg… - BMC physiology, 2013 - Springer
Background The acute response to genotoxic carcinogens in rats is an important model for
researching cancer initiation events. In this report we define the normal rat colonic …

Assessment of community-submitted ontology annotations from a novel database-journal partnership

TZ Berardini, D Li, R Muller, R Chetty, L Ploetz… - Database, 2012 - academic.oup.com
As the scientific literature grows, leading to an increasing volume of published experimental
data, so does the need to access and analyze this data using computational tools. The most …