A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures
Background The accelerating pace of biomedical publication has made it impractical to
manually, systematically identify papers containing specific information and extract this …
manually, systematically identify papers containing specific information and extract this …
VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data
Host responses to vaccines are complex but important to investigate. To facilitate the study,
we have developed a tool called Vaccine Induced Gene Expression Analysis Tool (VIGET) …
we have developed a tool called Vaccine Induced Gene Expression Analysis Tool (VIGET) …
Putting computational models of immunity to the test-an invited challenge to predict B. pertussis vaccination outcomes
Abstract Systems vaccinology studies have been used to build computational models that
predict individual vaccine responses and identify the factors contributing to differences in …
predict individual vaccine responses and identify the factors contributing to differences in …
VExD: a curated resource for human gene expression alterations following viral infection
Much of the host antiviral response is mediated through changes to host gene expression
levels. Likewise, viruses induce changes to host gene expression levels in order to promote …
levels. Likewise, viruses induce changes to host gene expression levels in order to promote …
Pipeline for retrieval of COVID-19 immune signatures
Objective The accelerating pace of biomedical publication has made retrieving papers and
extracting specific comprehensive scientific information a key challenge. A timely example of …
extracting specific comprehensive scientific information a key challenge. A timely example of …
[PDF][PDF] Computational Tools and Data Integration to Accelerate Vaccine Development: Challenges, Opportunities, and Future Directions
The development of effective vaccines is crucial for combating current and emerging
pathogens. Despite significant advances in the field of vaccine development there remain …
pathogens. Despite significant advances in the field of vaccine development there remain …
The Immune Epitope Database (IEDB): 2024 update
R Vita, N Blazeska, D Marrama… - Nucleic Acids …, 2025 - academic.oup.com
Over the past 20 years, the Immune Epitope Database (IEDB, iedb. org) has established
itself as the foremost resource for immune epitope data. The IEDB catalogs published …
itself as the foremost resource for immune epitope data. The IEDB catalogs published …