Best practices in data analysis and sharing in neuroimaging using MRI

TE Nichols, S Das, SB Eickhoff, AC Evans… - Nature …, 2017 - nature.com
Given concerns about the reproducibility of scientific findings, neuroimaging must define
best practices for data analysis, results reporting, and algorithm and data sharing to promote …

[HTML][HTML] The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

KJ Gorgolewski, T Auer, VD Calhoun, RC Craddock… - Scientific data, 2016 - nature.com
The development of magnetic resonance imaging (MRI) techniques has defined modern
neuroimaging. Since its inception, tens of thousands of studies using techniques such as …

[HTML][HTML] The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) data repository: Structural and functional MRI, MEG, and cognitive data from a cross …

JR Taylor, N Williams, R Cusack, T Auer, MA Shafto… - neuroimage, 2017 - Elsevier
This paper describes the data repository for the Cambridge Centre for Ageing and
Neuroscience (Cam-CAN) initial study cohort. The Cam-CAN Stage 2 repository contains …

[HTML][HTML] BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

KJ Gorgolewski, F Alfaro-Almagro, T Auer… - PLoS computational …, 2017 - journals.plos.org
The rate of progress in human neurosciences is limited by the inability to easily apply a wide
range of analysis methods to the plethora of different datasets acquired in labs around the …

The hippocampal film editor: sensitivity and specificity to event boundaries in continuous experience

A Ben-Yakov, RN Henson - Journal of Neuroscience, 2018 - Soc Neuroscience
The function of the human hippocampus is normally investigated by experimental
manipulation of discrete events. Less is known about what triggers hippocampal activity …

Memory hierarchies map onto the hippocampal long axis in humans

SHP Collin, B Milivojevic, CF Doeller - Nature neuroscience, 2015 - nature.com
Memories, similar to the internal representation of space, can be recalled at different
resolutions ranging from detailed events to more comprehensive, multi-event narratives …

[HTML][HTML] Phase entrainment of brain oscillations causally modulates neural responses to intelligible speech

B Zoefel, A Archer-Boyd, MH Davis - Current Biology, 2018 - cell.com
Due to their periodic nature, neural oscillations might represent an optimal" tool" for the
processing of rhythmic stimulus input [1–3]. Indeed, the alignment of neural oscillations to a …

[HTML][HTML] Functional topography of the human entorhinal cortex

T Navarro Schröder, KV Haak, NI Zaragoza Jimenez… - Elife, 2015 - elifesciences.org
Despite extensive research on the role of the rodent medial and lateral entorhinal cortex
(MEC/LEC) in spatial navigation, memory and related disease, their human homologues …

Extrinsic and intrinsic brain network connectivity maintains cognition across the lifespan despite accelerated decay of regional brain activation

KA Tsvetanov, RNA Henson, LK Tyler… - Journal of …, 2016 - Soc Neuroscience
The maintenance of wellbeing across the lifespan depends on the preservation of cognitive
function. We propose that successful cognitive aging is determined by interactions both …

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

AI Renton, TT Dao, T Johnstone, O Civier… - Nature …, 2024 - nature.com
Neuroimaging research requires purpose-built analysis software, which is challenging to
install and may produce different results across computing environments. The community …