FEGS: a novel feature extraction model for protein sequences and its applications

Z Mu, T Yu, X Liu, H Zheng, L Wei, J Liu - BMC bioinformatics, 2021 - Springer
Background Feature extraction of protein sequences is widely used in various research
areas related to protein analysis, such as protein similarity analysis and prediction of protein …

Evolution of cooperation in the traveler's dilemma game on two coupled lattices

C Xia, Q Miao, J Wang, S Ding - Applied Mathematics and Computation, 2014 - Elsevier
Although the evolutionary game theory provides a powerful framework to investigate various
social dilemmas, the traveler's dilemma game (TDG) is hardly concerned under this platform …

[HTML][HTML] 20D-dynamic representation of protein sequences

A Czerniecka, D Bielińska-Wąż, P Wąż, T Clark - Genomics, 2016 - Elsevier
A new method of comparison of protein sequences has been formulated. The sequence of
amino acids is represented by a set of point masses in a 20D space. The distribution of …

Mathematical approach to protein sequence comparison based on physiochemical properties

J Pal, S Ghosh, B Maji, DK Bhattacharya - ACS omega, 2022 - ACS Publications
The difficult aspect of developing new protein sequence comparison techniques is coming
up with a method that can quickly and effectively handle huge data sets of various lengths in …

DCGR: feature extractions from protein sequences based on CGR via remodeling multiple information

Z Mu, T Yu, E Qi, J Liu, G Li - BMC bioinformatics, 2019 - Springer
Background Protein feature extraction plays an important role in the areas of similarity
analysis of protein sequences and prediction of protein structures, functions and …

[PDF][PDF] A sequential development towards a unified approach to protein sequence comparison based on classified groups of amino acids

S Ghosh, J Pal, B Maji, DK Bhattacharya - Int. J. Eng. Technol, 2018 - academia.edu
The methods of comparison of protein sequences based on different classified groups of
amino acids add a significant contribution to the literature of protein sequence comparison …

[PDF][PDF] 3D-PAF curve: a novel graphical representation of protein sequences for similarity analysis

Z Mu, G Li, H Wu, X Qi - Match Commun Math Comput Chem, 2016 - match.pmf.kg.ac.rs
Based on the physicochemical properties of amino acids, in this paper, we first propose a
novel graphical representation called 3D-PAF curve of protein sequence, which …

[PDF][PDF] An intuitive graphical method for visualizing protein sequences based on linear regression and physicochemical properties

Z Qi, MZ Jin - MATCH Commun. Math. Comput. Chem, 2016 - match.pmf.kg.ac.rs
In this paper, a novel protein map is introduced under a linear regression model of eight
kinds of physicochemical indices. On the basis of the protein map, graphical representation …

C¹ Positive Surface over Positive Scattered Data Sites

F Ibraheem, MZ Hussain, AA Bhatti - PloS one, 2015 - journals.plos.org
The aim of this paper is to develop a local positivity preserving scheme when the data
amassed from different sources is positioned at sparse points. The proposed algorithm first …

[PDF][PDF] Evolutionary aspect of protein sequence network based on the 2D representation of amino acids

S Sharma, BK Boruah, T Ali - Network Biology, 2022 - academia.edu
For the comparative analysis of proteins, their proper clustering, and evolutionary
relationships require analysis of their sequences. We used a mathematical parameter …