The microbial rare biosphere: current concepts, methods and ecological principles

F Pascoal, R Costa, C Magalhães - FEMS Microbiology Ecology, 2021 - academic.oup.com
Our ability to describe the highly diverse pool of low abundance populations present in
natural microbial communities is increasing at an unprecedented pace. Yet we currently lack …

Exploring distribution and genomic diversity of begomoviruses associated with yellow mosaic disease of legume crops from India, highlighting the dominance of …

M Akram, N Kamaal, A Pratap, D Kumar… - Frontiers in …, 2024 - frontiersin.org
Yellow mosaic disease (YMD) caused by several begomoviruses is one of the major
constraints of over a dozen leguminous crops worldwide, particularly in Asian and Southeast …

Metaviromics analysis of marine biofilm reveals a glycoside hydrolase endolysin with high specificity towards Acinetobacter baumannii

GE Premetis, ND Georgakis, A Stathi… - Biochimica et Biophysica …, 2023 - Elsevier
Multidrug-resistant (MDR) bacteria are a growing threat to the public health. Among them,
the Gram-negative Acinetobacter baumannii is considered today as the most dangerous …

Deriving the Shannon Index from the soil molecular Humeome serves as a descriptor of soil organic matter stability under different cropping systems

M Drosos, M Orlando, V Cozzolino, A Scopa… - Chemical and Biological …, 2023 - Springer
Soil organic matter (SOM) is essential in maintaining soil structure, nutrient content, water
retention, and biodiversity. It also represents an important C pool that, if efficiently stabilized …

Decoding the DNA and RNA viromes of a tropical urban lagoon

FH Andrianjakarivony, Y Bettarel… - Environmental …, 2023 - Wiley Online Library
Human and livestock sewage is one of the major causes of excess nutrients, leading to the
eutrophication of aquatic ecosystems and potentially to the emergence or spread of …

Metagenomic analysis of the respiratory microbiome of a broiler flock from hatching to processing

KA Mulholland, MG Robinson, SJ Keeler, TJ Johnson… - Microorganisms, 2021 - mdpi.com
Elucidating the complex microbial interactions in biological environments requires the
identification and characterization of not only the bacterial component but also the …

Interpretability and accessibility of machine learning in selected food processing, agriculture and health applications

N Ranasinghe, A Ramanan, S Fernando… - arXiv preprint arXiv …, 2022 - arxiv.org
Artificial Intelligence (AI) and its data-centric branch of machine learning (ML) have greatly
evolved over the last few decades. However, as AI is used increasingly in real world use …

Exploring virome diversity in public data in South America as an approach for detecting viral sources from potentially emerging viruses

FG Mazur, LM Morinisi, JO Martins, PPB Guerra… - Frontiers in …, 2022 - frontiersin.org
The South American continent presents a great diversity of biomes, whose ecosystems are
constantly threatened by the expansion of human activity. The emergence and re …

The effect of variant interference on de novo assembly for viral deep sequencing

CJ Castro, RL Marine, E Ramos, TFF Ng - BMC genomics, 2020 - Springer
Background Viruses have high mutation rates and generally exist as a mixture of variants in
biological samples. Next-generation sequencing (NGS) approaches have surpassed …

[HTML][HTML] Metavirome survey of eight ray-finned fishes: Domination of giant viral members from pandoravirus and megaviricetes

FS Askari, A Mohebbi - Journal of Clinical and Basic Research, 2024 - jcbr.goums.ac.ir
Fish represent one of the major sources of food worldwide. Aquatic animal species in marine
ecosystems are exposed to a wide variety of microorganisms (1). Viruses, as the most …