MMseqs2 desktop and local web server app for fast, interactive sequence searches

M Mirdita, M Steinegger, J Söding - Bioinformatics, 2019 - academic.oup.com
The MMseqs2 desktop and web server app facilitates interactive sequence searches
through custom protein sequence and profile databases on personal workstations. By …

CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community

TR Connor, NJ Loman, S Thompson… - Microbial …, 2016 - microbiologyresearch.org
The increasing availability and decreasing cost of high-throughput sequencing has
transformed academic medical microbiology, delivering an explosion in available genomes …

Genetic diversity maintained among fragmented populations of a tree undergoing range contraction

JS Borrell, N Wang, RA Nichols, RJA Buggs - Heredity, 2018 - nature.com
Dwarf birch (Betula nana) has a widespread boreal distribution but has declined significantly
in Britain where populations are now highly fragmented. We analyzed the genetic diversity …

Visual opsin diversity in sharks and rays

NS Hart, TD Lamb, HR Patel, A Chuah… - Molecular biology …, 2020 - academic.oup.com
The diversity of color vision systems found in extant vertebrates suggests that different
evolutionary selection pressures have driven specializations in photoreceptor complement …

Fire ant social chromosomes: Differences in number, sequence and expression of odorant binding proteins

R Pracana, I Levantis, C Martinez-Ruiz, E Stolle… - Evolution …, 2017 - academic.oup.com
Variation in social behavior is common yet our knowledge of the mechanisms underpinning
its evolution is limited. The fire ant Solenopsis invicta provides a textbook example of a …

A Genome‐Wide Association Study of Non‐Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana

T Rungrat, AA Almonte, R Cheng, PJ Gollan… - Plant …, 2019 - Wiley Online Library
Field‐grown plants have variable exposure to sunlight as a result of shifting cloud‐cover,
seasonal changes, canopy shading, and other environmental factors. As a result, they need …

Population Genomic Signatures of Genetic Structure and Environmental Selection in the Catadromous Roughskin Sculpin Trachidermus fasciatus

YL Li, DX Xue, BD Zhang, JX Liu - Genome Biology and …, 2019 - academic.oup.com
Understanding the patterns of genetic diversity and adaptation across species' range is
crucial to assess its long-term persistence and determine appropriate conservation …

Greenlip Abalone (Haliotis laevigata) Genome and Protein Analysis Provides Insights into Maturation and Spawning

NA Botwright, M Zhao, T Wang… - G3: Genes …, 2019 - academic.oup.com
Abstract Wild abalone (Family Haliotidae) populations have been severely affected by
commercial fishing, poaching, anthropogenic pollution, environment and climate changes …

The pursuit of hoppiness: propelling hop into the genomic era

ST Hill - 2016 - ir.library.oregonstate.edu
Hop (Humulus lupulus L. var lupulus) is a plant of great cultural significance, used as a
medicinal herb for thousands of years, and for flavor and as a preservative in brewing beer …

First mitochondrial genome of a periwinkle from the genus Littoraria: Littoraria sinensis

MY Li, YL Li, TF Xing, JX Liu - Mitochondrial DNA Part B, 2019 - Taylor & Francis
The nearly complete sequence of the mitochondrial genome of the periwinkle Littoraria
sinensis is presented. This is the first mitochondrial genome of the genus Littoraria and the …